Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30655
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53440.1 68418.m06641 expressed protein                             29   2.7  
At4g16050.1 68417.m02435 expressed protein                             28   4.7  

>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 646 PKRDSSSSEKDPKRGKNTDSIKENALSPEVAKLKKVEDTPAKVKVDMLNLNL 491
           P+R  SSS    + G  +D I + A S EVA+L    +   + KV     N+
Sbjct: 454 PERQLSSSVVQEENGNASDQITKGASSREVAELSGGSERGTRQKVSEKTANM 505


>At4g16050.1 68417.m02435 expressed protein
          Length = 666

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -2

Query: 634 SSSSEKDPKRGKNTD-SIKENALSPEVAKLKKVEDTPAKVK 515
           ++  E+D +R K    +IKE AL  E A++ KVE+T AK+K
Sbjct: 611 AAEKEEDDERLKQRKLAIKELALKTE-ARMLKVENTLAKIK 650


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,964,109
Number of Sequences: 28952
Number of extensions: 108197
Number of successful extensions: 372
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)