Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30654
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 169 3e-43
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.0
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 28 1.4
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 27 1.8
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 27 1.8
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 27 1.8
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 26 4.2
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce... 26 5.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 7.3
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 7.3
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 23 7.3
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 9.6
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 169 bits (411), Expect = 3e-43
Identities = 79/106 (74%), Positives = 89/106 (83%)
Frame = +1
Query: 253 MYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRCQ 432
+YAEKV RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+SGKLR
Sbjct: 88 LYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAA 147
Query: 433 RAKSMKFVDGLMIHSGDPCQ*LRQHSTRHVLLRQGVLGIKVKIMLP 570
RAKSMKF DG MIHSG P +TRHVLLRQGVLG+KVKIMLP
Sbjct: 148 RAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP 193
Score = 130 bits (313), Expect = 2e-31
Identities = 64/81 (79%), Positives = 69/81 (85%)
Frame = +2
Query: 11 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 190
ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLGEKGR
Sbjct: 7 ISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGR 66
Query: 191 RIRELTSVVQKRFNIPEQSVE 253
RIRELT++VQKRF E +VE
Sbjct: 67 RIRELTALVQKRFKFAENTVE 87
>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 28.3 bits (60), Expect = 1.0
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 337 AVRRACYGVLRFIMESGARGC-EVVVSGKLRCQRAKSMKFVDGLMIHSGDPCQ*LRQHST 513
A R G ++ ++ESG RGC VV + R + +GL+ +S Q + HS
Sbjct: 128 AQRYGIEGAVKAVIESGIRGCIGKVVMDQPRYATQTGVSMHEGLIENSNSLNQAVESHSK 187
Query: 514 RH 519
H
Sbjct: 188 FH 189
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = +3
Query: 75 LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLP 212
L S+P AW+ LPS R+ L P P R+ ++K A +SS+P
Sbjct: 8 LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 273 SHLFSIHSTDCSGMLNRFCTTEVSSRILRPFSPST 169
SHL S+ +N F T SSR L PFS +T
Sbjct: 119 SHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153
>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 628 YQDVVWLWLLRARSCLAGPT 569
Y D W+WLL A++ + P+
Sbjct: 138 YPDAGWIWLLDAKAVIMNPS 157
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 7.3
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +2
Query: 473 TLETLVNDYVNTLPDMCFSDKEY*ESR-SKSCCRGTSKART----GPKKPQPDHILVTEP 637
T E L N ++ T +C + +K CC G SKA+T PK + + L+TE
Sbjct: 519 TCEQLQNGFIPTCERLCTILLSCGRHQCNKKCCSGYSKAQTRLARRPKGAKLRYHLLTEE 578
Query: 638 KDE 646
+E
Sbjct: 579 FEE 581
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 358 GVLRFIMESGARGCEVVVSGKLRCQRAKSM 447
GV RFI SG GC V + L C KSM
Sbjct: 403 GVNRFIATSGYDGC-VKLWNPLNCSLIKSM 431
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 23.0 bits (47), Expect(2) = 7.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 386 VPVVVKLLYLASCVVNVPNQ*SL*MDS*STLETLVNDYVNTLP 514
+P+ LL C V+ Q SL + LET+V + +N+ P
Sbjct: 266 IPISTSLLSKPICDVSFDGQFSLYIAHQLILETIVVEVMNSHP 308
Score = 20.6 bits (41), Expect(2) = 7.3
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +2
Query: 593 GPKKPQPDHILVTEPKDEPVP 655
GP P + + + P D P+P
Sbjct: 346 GPSPPAYEQVARSSPTDIPLP 366
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 25.0 bits (52), Expect = 9.6
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = -1
Query: 462 SIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKLVS*RFGLG--DS 289
S+Y + T+ LA+YN E I+ST S V R LG
Sbjct: 296 SVYSTMAYAEATSNLAKYNTIAFGNCLDEKFEEEIISSTARSFFLGDEVKKRLLLGAYSL 355
Query: 288 AKATSSHLFS 259
A+ SS LFS
Sbjct: 356 ARMNSSDLFS 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,551
Number of Sequences: 5004
Number of extensions: 60739
Number of successful extensions: 162
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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