Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30654
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 187 6e-48
05_02_0069 - 6324082-6324495 33 0.20
11_01_0749 - 6305087-6307522 31 0.81
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 29 2.5
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 3.3
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 4.3
02_02_0343 + 9163976-9165220 29 4.3
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 29 4.3
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 28 5.7
08_01_0346 - 3063440-3064189 28 7.5
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 27 9.9
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 187 bits (456), Expect = 6e-48
Identities = 90/115 (78%), Positives = 97/115 (84%)
Frame = +1
Query: 253 MYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRCQ 432
+YAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR Q
Sbjct: 88 LYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQ 147
Query: 433 RAKSMKFVDGLMIHSGDPCQ*LRQHSTRHVLLRQGVLGIKVKIMLPWDQQGKNGP 597
RAKSMKF DG MI SG P + RHVLLRQGVLGIKVKIML WD +GK GP
Sbjct: 148 RAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGP 202
Score = 143 bits (347), Expect = 1e-34
Identities = 71/81 (87%), Positives = 74/81 (91%)
Frame = +2
Query: 11 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 190
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 191 RIRELTSVVQKRFNIPEQSVE 253
RIRELTSVVQKRFN PE VE
Sbjct: 67 RIRELTSVVQKRFNFPENGVE 87
>05_02_0069 - 6324082-6324495
Length = 137
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 303 GLGDSAKATSSHLFSIHSTDCSGMLNRFCTTEVSS 199
GLG S T++HL +I S+ C G L R C+ V +
Sbjct: 37 GLGYSQLLTTAHLGAISSSSCGGRLGRQCSAAVGA 71
>11_01_0749 - 6305087-6307522
Length = 811
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 328 GGLAVRRACYGV-LRFIMESGARGCEVVVSGKLRCQRAKSMKFVDGL 465
GG +R G ++ + G R C V+ SG+L C R + +K DGL
Sbjct: 129 GGGRSKRVYLGPPIQALSSGGYRVCGVLSSGELHCWRWRGLKIPDGL 175
>08_01_0004 +
39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 288 AKATSSHLFSIHSTDCSGMLNRFCTTEVSSRILRPFSPS 172
++ + +H F I + S + C+ VS+R+LRPF S
Sbjct: 740 SRKSMNHSFGIGGGETSNTGSSLCSHPVSARLLRPFEQS 778
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 451 TSLIWHVDNAACQIQQLHNHGHQIP**NGEHHSKH 347
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 72 SLGSWPRTAT-PAWKCGSLPSARRSLLWPPGHRVCS 176
++ SWPR P W C S RR L P R C+
Sbjct: 10 AVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCA 45
>02_02_0343 + 9163976-9165220
Length = 414
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 273 SHLFSIHSTDCSGMLNRFCTTEVSSRILRPFSPSTL 166
S L S+ +DC M +R+C + +R +P PS+L
Sbjct: 163 SSLQSLRISDCGRMFSRWCMVDAGARTSKPL-PSSL 197
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -3
Query: 136 RADGSDPHFHAGVAVLGQLPSEELIEFCLENPIS 35
R DG +PH A + G ++ CL P S
Sbjct: 768 RQDGGEPHLQAAAVLAGSRGGDDAAHACLRRPSS 801
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 481 LQSGS*VHLQTSLIWHVDNAACQIQQLHNHGH 386
+QSG+ LIWH+ + C+I+ H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 301 AESLRYKLIGGLAVRRACYGVLR 369
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 267 GGYSWPLRYRPG-RISKIQAYRRSRCTSCLLWC 362
G SW RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,853,209
Number of Sequences: 37544
Number of extensions: 440732
Number of successful extensions: 1431
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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