Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30654
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)       199   1e-51
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)              29   3.3  
SB_26227| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_45449| Best HMM Match : Glyco_hydro_47 (HMM E-Value=1.4e-07)        29   4.4  
SB_36690| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_37823| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)                  28   7.7  

>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
          Length = 240

 Score =  199 bits (486), Expect = 1e-51
 Identities = 95/117 (81%), Positives = 103/117 (88%)
 Frame = +1

Query: 253 MYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRCQ 432
           +YAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLRFIMESGA+GCEVVVSGKLR Q
Sbjct: 86  LYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQ 145

Query: 433 RAKSMKFVDGLMIHSGDPCQ*LRQHSTRHVLLRQGVLGIKVKIMLPWDQQGKNGPEE 603
           RAKSMKFVDGLM+H+G+P       + RHV LRQGVLGIKVKIMLPWD  GK GP++
Sbjct: 146 RAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGIKVKIMLPWDPTGKTGPKK 202



 Score =  149 bits (360), Expect = 3e-36
 Identities = 73/81 (90%), Positives = 77/81 (95%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 190
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64

Query: 191 RIRELTSVVQKRFNIPEQSVE 253
           RIRELTSVVQKRF  PE SVE
Sbjct: 65  RIRELTSVVQKRFGFPEGSVE 85



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +2

Query: 587 RTGPKKPQPDHILVTEPKDEPVP 655
           +TGPKKP PD + + EPKDE VP
Sbjct: 197 KTGPKKPLPDQVSIVEPKDEVVP 219


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 77   RELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKG-RRIRELTSVVQKRFNIPEQSVE 253
            R+ AE+     ++    I SE+++MA R      EK    IR    V +  +N  ++ ++
Sbjct: 2588 RDEAEEKSIEADIEKNLIESEVVVMALRNSIKTTEKSLDLIRPEAKVTEHEYNNCQRDID 2647

Query: 254  CM 259
            CM
Sbjct: 2648 CM 2649


>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 48  SRQNSMSSSLGSWPRTATPAWKCGSLPSARRSLLWPPGH-RVCSERKDAESVSSLP*Y 218
           +R+  ++ +L + P T     +CG + +AR  L+  P H R        + V SLP Y
Sbjct: 272 TRKMMLTRALSTTPSTTPELRRCGGVLTAREGLIMSPNHPRPYPSDTHCKWVISLPSY 329


>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 273 YSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPW 395
           Y+W L + P  +  ++ Y R    +  L C+P  +  W  W
Sbjct: 4   YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44


>SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)
          Length = 651

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -1

Query: 390 GTRF-HDETENTIASTTYSETSDKLVS*RFGLGDSAKATSSHLFSIHSTDCSGMLNRFCT 214
           G R+   +  NT+ + TYS+ S +     FG     +  S  L S H T C   L  F +
Sbjct: 266 GHRYPRQQYRNTVVTATYSDISTRRTLQEFGCPKGEQGASCDL-SGHQTACLSRLPSFSS 324

Query: 213 T 211
           T
Sbjct: 325 T 325


>SB_26227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 581

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +1

Query: 250 RMYAEKVATRGLCAIAQAESLRYKLIGGLA--VRRACYGVLRFIMESGARGCEVVVSGKL 423
           R +AE   +R   + +Q+ESL  K   GL+   RR   GV R   + GA G  +    + 
Sbjct: 307 RNFAESFRSRSRTSTSQSESLNEKNSKGLSKGKRRNTNGVERSHFKEGAMGSLIGSKVRN 366

Query: 424 RC-QRAKSMKFVDGLMIH 474
            C  +  S+K   G MI+
Sbjct: 367 DCNNKTGSLKKATGEMIN 384


>SB_45449| Best HMM Match : Glyco_hydro_47 (HMM E-Value=1.4e-07)
          Length = 305

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 289 AIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRCQRAKSMKFVDGL 465
           ++  +  LR    GG A RR  +    F   S +R C+   S KL C + K+ K ++ L
Sbjct: 10  SVRASSLLRQLAKGGCAARRLSWVTPGF---SQSRRCKTTASAKLACLQEKAKKAMESL 65


>SB_36690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 480 RPLSMITSTLYQTCASQTRS-TRNQGQNHVAVGPARQERARRSHNQTTSW*QSPR 641
           R +S  T+  + TC    R  +RN  + H A G   ++ +R ++   T+  Q  R
Sbjct: 161 RDMSRSTNKTHTTCGQGHRDMSRNNNKTHTAGGQGHRDMSRNTYKTHTAGGQGHR 215


>SB_37823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 283 GHE*PPFQHTFYRLLWNVESLLYYGS 206
           GH    ++H   RL WN+E L +Y S
Sbjct: 263 GHHVGDWEHVTIRLNWNMEPLQFYAS 288


>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
          Length = 776

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 352 CYGVLRFIMESGARGCEVVVSGKLRC 429
           C G LRF M   A+ C+ + S  LRC
Sbjct: 111 CLGKLRFAMPMKAQVCDALESSGLRC 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,507,988
Number of Sequences: 59808
Number of extensions: 494677
Number of successful extensions: 1517
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)