Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30654
(657 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 190 6e-49
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical p... 29 3.8
Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.8
X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein... 29 3.8
U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein... 29 3.8
U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein... 29 3.8
U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein... 29 3.8
U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protei... 29 3.8
AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3 pr... 29 3.8
AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone prote... 29 3.8
AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone prote... 29 3.8
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 28 6.7
U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical p... 28 6.7
Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z31590-7|CAA83463.1| 361|Caenorhabditis elegans Hypothetical pr... 27 8.9
U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein... 27 8.9
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 190 bits (464), Expect = 6e-49
Identities = 90/118 (76%), Positives = 102/118 (86%)
Frame = +1
Query: 253 MYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRCQ 432
+YAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G EV+VSGKLR Q
Sbjct: 88 LYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQ 147
Query: 433 RAKSMKFVDGLMIHSGDPCQ*LRQHSTRHVLLRQGVLGIKVKIMLPWDQQGKNGPEEA 606
RAK+MKFVDGLMIHSG P Q + RHV LRQGV+GIKVKIMLP+D +G+NGP A
Sbjct: 148 RAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNA 205
Score = 126 bits (305), Expect = 1e-29
Identities = 61/82 (74%), Positives = 71/82 (86%)
Frame = +2
Query: 8 NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKG 187
N++KK+K V G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+VLGE+G
Sbjct: 6 NVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERG 65
Query: 188 RRIRELTSVVQKRFNIPEQSVE 253
RRI+ELTSVVQKRF E SVE
Sbjct: 66 RRIKELTSVVQKRFGFEEGSVE 87
Score = 30.7 bits (66), Expect = 0.95
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 581 KARTGPKKPQPDHILVTEPKDEPVP 655
+ + GP+ PDH+ + EP++E +P
Sbjct: 197 RGQNGPRNALPDHVQIVEPQEEVLP 221
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
protein C05C10.2b protein.
Length = 1553
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 8 NISKKRKFVGDGVFKAELNEFLTRELAEDGY 100
+I KK F GDG F E E+ +DGY
Sbjct: 892 DIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
protein C05C10.2a protein.
Length = 1551
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 8 NISKKRKFVGDGVFKAELNEFLTRELAEDGY 100
+I KK F GDG F E E+ +DGY
Sbjct: 892 DIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 83 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 244
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 83 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 244
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720
>Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical
protein T10C6.13 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.7 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.3 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.2 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical
protein F54E12.1 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical
protein F08G2.3 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical
protein B0035.10 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical
protein F22B3.2 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein 6
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein 17
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein 27
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protein
59 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone protein
32 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone protein
49 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 354 ASTTYSETSDKLVS*RFGLGDSAKATSSHLFSIHSTDCSGML 229
A+ T+ +S+KL + G S + H F I+STD L
Sbjct: 153 AAATFDSSSNKLAATSLAFGHSTPQYTLHSFVINSTDFGASL 194
>U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical
protein T02G5.12 protein.
Length = 556
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 369 TENTIASTTYSETSDKLVS*RFGLGDSAKATSSHLFSIHSTDCSGMLNRFC 217
T NTI + +D+ + GLGD +++I T C G++ FC
Sbjct: 395 TANTIGRLIFGVVADQKLPLPAGLGDDTARNRLWMYNISLTIC-GIVTAFC 444
>Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical
protein Y49E10.6 protein.
Length = 136
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>Z31590-7|CAA83463.1| 361|Caenorhabditis elegans Hypothetical
protein R01H10.6 protein.
Length = 361
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -1
Query: 492 LTRVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKL 319
+TR + +E+IY L TT+ FTTT H + NTI+S + + + K+
Sbjct: 90 VTRNRGISNEAIYVLAKVSATTTKFEFI--FTTTNPASHSKLFNTISSISRAYETTKM 145
>U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein 71
protein.
Length = 136
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 267 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 371
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,174,071
Number of Sequences: 27780
Number of extensions: 355034
Number of successful extensions: 1033
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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