Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30654
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)             187   5e-48
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)             186   2e-47
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso...   183   8e-47
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila...    33   0.17 
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila...    33   0.17 
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai...    29   3.6  
At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot...    29   3.6  
At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai...    28   4.8  
At2g25150.1 68415.m03008 transferase family protein similar to 1...    28   6.3  
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ...    27   8.3  

>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score =  187 bits (456), Expect = 5e-48
 Identities = 88/115 (76%), Positives = 98/115 (85%)
 Frame = +1

Query: 253 MYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRCQ 432
           +YAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR  
Sbjct: 86  LYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAA 145

Query: 433 RAKSMKFVDGLMIHSGDPCQ*LRQHSTRHVLLRQGVLGIKVKIMLPWDQQGKNGP 597
           RAKSMKF DG M+ SG P +     + RHVLLRQGVLG+KVKIML WD +GK GP
Sbjct: 146 RAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGP 200



 Score =  140 bits (339), Expect = 7e-34
 Identities = 69/81 (85%), Positives = 74/81 (91%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 190
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 191 RIRELTSVVQKRFNIPEQSVE 253
           RIRELTS+VQKRF  P+ SVE
Sbjct: 65  RIRELTSLVQKRFKFPQDSVE 85


>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
          Length = 250

 Score =  186 bits (452), Expect = 2e-47
 Identities = 88/116 (75%), Positives = 98/116 (84%)
 Frame = +1

Query: 253 MYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRCQ 432
           +YAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR  
Sbjct: 86  LYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAA 145

Query: 433 RAKSMKFVDGLMIHSGDPCQ*LRQHSTRHVLLRQGVLGIKVKIMLPWDQQGKNGPE 600
           RAKSMKF DG M+ SG P +     + RHVLLRQGVLGIKVKIML WD  GK+GP+
Sbjct: 146 RAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPK 201



 Score =  138 bits (335), Expect = 2e-33
 Identities = 69/81 (85%), Positives = 73/81 (90%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 190
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 191 RIRELTSVVQKRFNIPEQSVE 253
           RIRELTS+VQKRF  P  SVE
Sbjct: 65  RIRELTSLVQKRFKFPVDSVE 85



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 587 RTGPKKPQPDHILVTEPKDEPV 652
           ++GPK P PD +++  PKD+ V
Sbjct: 197 KSGPKTPLPDVVIIHAPKDDVV 218


>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
           protein S3a - Xenopus laevis, PIR:R3XL3A
          Length = 249

 Score =  183 bits (446), Expect = 8e-47
 Identities = 86/116 (74%), Positives = 98/116 (84%)
 Frame = +1

Query: 253 MYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRCQ 432
           +YAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR  
Sbjct: 86  LYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAA 145

Query: 433 RAKSMKFVDGLMIHSGDPCQ*LRQHSTRHVLLRQGVLGIKVKIMLPWDQQGKNGPE 600
           RAKSMKF DG M+ SG P +     + RHVLLRQGVLGIKVK+ML WD +G +GP+
Sbjct: 146 RAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPK 201



 Score =  138 bits (335), Expect = 2e-33
 Identities = 69/81 (85%), Positives = 73/81 (90%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 190
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 191 RIRELTSVVQKRFNIPEQSVE 253
           RIRELTS+VQKRF  P  SVE
Sbjct: 65  RIRELTSLVQKRFKFPVDSVE 85



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 581 KARTGPKKPQPDHILVTEPKDE 646
           K  +GPK P PD +++  PK+E
Sbjct: 195 KGISGPKTPLPDVVIIHSPKEE 216


>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 295

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 208 SELTDSASFLSEHTLCPGGHNNDLRADGSD 119
           SEL +  + LSEH+L   GH  +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284


>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 406

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 208 SELTDSASFLSEHTLCPGGHNNDLRADGSD 119
           SEL +  + LSEH+L   GH  +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395


>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 442

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 208 SELTDSASFLSEHTLCPGGHNNDLRADGSD 119
           +EL    + LSEH++   GH  ++ ADG D
Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431


>At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein
           contains Pfam PF05577: Serine carboxypeptidase S28
          Length = 493

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 12  FQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSA 134
           F RS N+    F    S S +L +W R   P   CGSL S+
Sbjct: 161 FNRSSNVENPWFFFGVSYSGALSAWFRLKFPHLTCGSLASS 201


>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
           domain-containing protein contains Pfam profile PF01556:
           DnaJ C terminal region
          Length = 438

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 444 NEVCRWTHDPLWRP--LSMITSTLYQTCASQTRSTRNQGQNHVAVGPARQERARRSHNQT 617
           N   R +H P  RP  LS   S+  ++  S++ S R++G +H  V  +   ++R   N T
Sbjct: 90  NSSSRRSHTPQARPTYLSSSASSNRRSAFSRSTSRRDEGSSHSGVR-SHGLKSRPISNNT 148

Query: 618 TSW*QSPRTSP 650
           +    SP TSP
Sbjct: 149 SPM-TSPFTSP 158


>At2g25150.1 68415.m03008 transferase family protein similar to
           10-deacetylbaccatin III-10-O-acetyl transferase
           [gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
           III-2-O-benzoyl transferase [gi:11559716] from Taxus
           cuspidata; contains Pfam transferase family domain
           PF00248; contains EST gb:R65039
          Length = 461

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 139 LRADGSDPHFHAGVAVLGQLPSEELIEF 56
           L+   SDP    GV V+ +LP + ++EF
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEF 445


>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 781

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +2

Query: 17  KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 193
           K RK  G  + KA + E+  ++    GYSG      P+  + ++     +S+ G+K ++
Sbjct: 349 KTRKLTGIRLQKASM-EYGKKKTTRSGYSGHGKSTNPLAMDDLMFVKDPRSLSGKKNKK 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,605,652
Number of Sequences: 28952
Number of extensions: 338673
Number of successful extensions: 999
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)