Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30653
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 140 1e-34
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 138 4e-34
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 117 2e-27
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 97 1e-21
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 90 2e-19
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 31 0.097
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 29 0.52
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 28 1.2
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 28 1.2
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 27 1.6
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 1.6
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 27 2.1
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 27 2.7
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 2.7
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 4.8
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 4.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 4.8
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 4.8
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 26 4.8
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p... 25 6.3
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 25 6.3
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 6.3
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 6.3
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 8.4
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 8.4
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 140 bits (339), Expect = 1e-34
Identities = 66/83 (79%), Positives = 73/83 (87%)
Frame = +3
Query: 255 GIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEA 434
GIPPAPRGVPQIEVTFD+DANGILNVSA+EK T K KITITNDKGRLSKEEI+RMV+EA
Sbjct: 461 GIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEA 520
Query: 435 EKYRNEDDKQKETIQAKNALESY 503
EKY+ ED+ + IQAKN LESY
Sbjct: 521 EKYKAEDEAETSRIQAKNHLESY 543
Score = 100 bits (239), Expect = 2e-22
Identities = 53/86 (61%), Positives = 56/86 (65%)
Frame = +1
Query: 1 AILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPG 180
AIL GD SE+ QD GIETAGGVMT LIKRN Y+DNQPG
Sbjct: 376 AILVGDTSEKTQDLLLLDVAPLSLGIETAGGVMTPLIKRNTTIPTKKSEVFSTYADNQPG 435
Query: 181 VLIQVFEGERAMTKDNNLLGKFELTG 258
VLIQVFEGERA TKD NLLGKFEL+G
Sbjct: 436 VLIQVFEGERARTKDCNLLGKFELSG 461
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +2
Query: 509 SMKSTMEDEKLKEKISDSDKQTI 577
S++++++D LK+K+ SDK+ I
Sbjct: 546 SLRNSLDDPNLKDKVDASDKEAI 568
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 138 bits (335), Expect = 4e-34
Identities = 66/83 (79%), Positives = 72/83 (86%)
Frame = +3
Query: 255 GIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEA 434
GIPPAPRGVPQIEVTFD+DANGILNVSA+EK T K KITITNDKGRLSKEEI+RMV EA
Sbjct: 461 GIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEA 520
Query: 435 EKYRNEDDKQKETIQAKNALESY 503
EKY+ ED+ + IQAKN LESY
Sbjct: 521 EKYKAEDEAESGRIQAKNHLESY 543
Score = 101 bits (242), Expect = 8e-23
Identities = 53/86 (61%), Positives = 56/86 (65%)
Frame = +1
Query: 1 AILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPG 180
A+L GD SE+ QD GIETAGGVMT LIKRN YSDNQPG
Sbjct: 376 AVLTGDTSEKTQDLLLLDVAPLSMGIETAGGVMTPLIKRNTTIPTKKSEIFSTYSDNQPG 435
Query: 181 VLIQVFEGERAMTKDNNLLGKFELTG 258
VLIQVFEGERA TKD NLLGKFEL+G
Sbjct: 436 VLIQVFEGERARTKDCNLLGKFELSG 461
Score = 28.7 bits (61), Expect = 0.68
Identities = 9/23 (39%), Positives = 19/23 (82%)
Frame = +2
Query: 509 SMKSTMEDEKLKEKISDSDKQTI 577
S++++++D LK+K+ SDK+T+
Sbjct: 546 SLRNSLDDPNLKDKVDASDKETV 568
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 117 bits (281), Expect = 2e-27
Identities = 55/84 (65%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
Frame = +3
Query: 255 GIPPAPRGVPQIEVTFDIDANGILNVSAIEKS-TNKENKITITNDKGRLSKEEIERMVNE 431
GIPPAPRGVPQIEVTF++DANG+L VSA++KS K K+ I NDKGRLS+E+IERMV E
Sbjct: 490 GIPPAPRGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVKE 549
Query: 432 AEKYRNEDDKQKETIQAKNALESY 503
AE++ ED KE I+A+N LE+Y
Sbjct: 550 AEEFAEEDKILKERIEARNTLENY 573
Score = 72.1 bits (169), Expect = 6e-14
Identities = 37/62 (59%), Positives = 40/62 (64%)
Frame = +1
Query: 73 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFEL 252
GIET GGVMT LI RN DNQ VLIQV+EGER +TKDNNLLGKF+L
Sbjct: 429 GIETTGGVMTKLIGRNTPIPTRKSQIFSTAVDNQNTVLIQVYEGERTLTKDNNLLGKFDL 488
Query: 253 TG 258
G
Sbjct: 489 RG 490
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 527 EDEKLKEKISDSDKQTILDKCND 595
+DE+L K+ DKQ +LD D
Sbjct: 583 DDEQLGGKVDPEDKQAVLDAVED 605
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 97.5 bits (232), Expect = 1e-21
Identities = 47/84 (55%), Positives = 61/84 (72%)
Frame = +3
Query: 255 GIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEA 434
GI PAP+G PQIEV+FD+DA+GI+NVSA +K+TNK++ IT+ G L+ EIE MV +A
Sbjct: 504 GIAPAPKGQPQIEVSFDVDADGIINVSARDKATNKDSSITVAGSSG-LTDSEIEAMVADA 562
Query: 435 EKYRNEDDKQKETIQAKNALESYC 506
EKYR D +KE I+ N ES C
Sbjct: 563 EKYRASDMARKEAIENGNRAESVC 586
Score = 62.5 bits (145), Expect = 5e-11
Identities = 35/86 (40%), Positives = 43/86 (50%)
Frame = +1
Query: 1 AILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPG 180
AI G S V+D GIET GGV T LI RN +D Q
Sbjct: 419 AIQGGVLSGHVKDLVLLDVTPLSLGIETLGGVFTRLINRNTTIPTRKSQVFSTAADGQTA 478
Query: 181 VLIQVFEGERAMTKDNNLLGKFELTG 258
V I+VF+GER + +DN L+G F+LTG
Sbjct: 479 VEIRVFQGERELVRDNKLIGNFQLTG 504
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 90.2 bits (214), Expect = 2e-19
Identities = 39/83 (46%), Positives = 58/83 (69%)
Frame = +3
Query: 255 GIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEA 434
GIPP PRG ++E TF++DANGIL V+A+EK+T + I ITN G LS +I+ M+ A
Sbjct: 466 GIPPMPRGQAELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTKIQEMIENA 525
Query: 435 EKYRNEDDKQKETIQAKNALESY 503
+K++ +D + ++AK+ LESY
Sbjct: 526 DKFKQQDKDFAKKLEAKSQLESY 548
Score = 41.9 bits (94), Expect = 7e-05
Identities = 23/79 (29%), Positives = 33/79 (41%)
Frame = +1
Query: 22 SEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFE 201
S++ QD G+ G V + RN +DNQ V V++
Sbjct: 388 SDKTQDLLLLDVVPLSLGVAMEGNVFGVVCPRNTPIPTIKKRTFTTVADNQTTVTFPVYQ 447
Query: 202 GERAMTKDNNLLGKFELTG 258
GER +N LG+F+LTG
Sbjct: 448 GERVNCAENEPLGEFQLTG 466
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 31.5 bits (68), Expect = 0.097
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 309 DANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKE--TIQA 482
D LNVS + S +E +T ++ R+ +EE +RM ++ E K+K T+Q
Sbjct: 58 DLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQG 117
Query: 483 KNA 491
+A
Sbjct: 118 LDA 120
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 29.1 bits (62), Expect = 0.52
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 387 KGRLSKEEIERMVNEAEKYRNEDD 458
KG LSKEE+ER V +A K N D
Sbjct: 525 KGTLSKEELERRVYDAAKLANAYD 548
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 354 NKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALES 500
NK+ K T D SKEE+E +V E E D +Q + K+ L++
Sbjct: 529 NKKGKHTQIEDPTAASKEELENLVREDE----NDSEQLDHFDMKSILKA 573
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 324 LNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 455
L VS ++S K + + K EE+E VNE E++R D
Sbjct: 257 LCVSPEKRSLAKTREAVLAVTKWTTDDEELESFVNEEEEFRASD 300
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 345 KSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQ-KETIQAKNALESY 503
K K ++++ + RL E +E+ EAE DK ET+ KNALE Y
Sbjct: 534 KKLVKVADLSVSVQEDRLPTEVLEKY-REAEHQMIATDKLVAETVDRKNALEEY 586
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 317 RYPQRFRYREVHQQGEQDHHYQRQRSS-LQGRDRAY 421
R P R +YRE H + + H R QGR +Y
Sbjct: 320 RDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSY 355
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 71 SVLRLLEVS*PHSSSVTLPSPHNRLRHSPPTLITNPEYSSKYLRVSVL 214
+ +RL+ P S S + S HN RH+P T T S R+ +
Sbjct: 242 AAIRLVNSGIPDSPSEAIKSIHNNPRHAPTTKETANSLSIAAFRLGCM 289
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = -3
Query: 334 ETLRIPLASMSKVTSI*GTPRGAGGIP 254
E L PLA MS TSI G G GG P
Sbjct: 76 EVLVDPLADMSAGTSIMGNNFGFGGFP 102
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +3
Query: 330 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNA 491
V A+ KS +++ ++ G + EEI ++++ E E+D++ E N+
Sbjct: 597 VPALFKSIDQDESDILSERIGAPTAEEISQLLDSVETNEEENDEELEKAMGVNS 650
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 387 KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALE 497
+G L E E NEA++ NE+ E +N E
Sbjct: 89 EGELKLENFENQENEADEAENEETSYSEQNHTENTEE 125
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 119 TLPSPHNRLRHSPPTLITNPEYSSKYLR 202
T P RLRH+P I E KYLR
Sbjct: 43 TYGQPFKRLRHAPEKYIEFLELRLKYLR 70
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 4.8
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Frame = +3
Query: 279 VPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK------ 440
+ ++ +F + N + +I K+ N+E +K R+ E+ ++++ +K
Sbjct: 1213 IDKVRNSFFKNLNSFYEMYSIAKAENEER---FEKEKRRIMSEDRDKLIRGRQKTSIVAK 1269
Query: 441 YRN-------EDDKQKETIQAKNALES 500
YRN DDKQ + KN+LE+
Sbjct: 1270 YRNKRELPEDSDDKQDTASKDKNSLET 1296
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 399 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYC 506
S+ E +++ E ++ ED+KQ E + K AL+ +C
Sbjct: 299 SETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFC 334
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 503 LLSMKSTMEDEKLKEKISD 559
++S+K MEDEKL EK+++
Sbjct: 112 VISLKLIMEDEKLIEKVNE 130
>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 279 VPQIEVTFDIDANGILNVSAIEKSTNKENKITITN-DKGRLSKEEIERMVNEAEK 440
+P TF NG++N+S + ++ N E + DKGR + + ++ E K
Sbjct: 122 IPVKRGTFIEFRNGMINISPVGRNANTEERNEFERFDKGRKIRATMVDVLREKFK 176
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 315 NGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAE-KYRNEDDKQKETIQAKNA 491
+GIL+ + IEK +K K+ + N+ SK+ + + + +E DK KN
Sbjct: 154 DGILSFTVIEKVDDKNLKVRVNNNGKISSKKGVNLPKTDVDLPALSEKDKADLRFGVKNG 213
Query: 492 LE 497
++
Sbjct: 214 VD 215
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 345 KSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKET 473
K NK+++ + +K +L +E+ AEK N DDK + T
Sbjct: 39 KQKNKKSRNQVRREKKKLLREKTNSGAKLAEK--NSDDKDQLT 79
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 315 NGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 455
N + N S +KS+NKE + + RLS + + K ++ED
Sbjct: 409 NTVQNESKSQKSSNKEGRSSRGGFFSRLSFSRSSSRMKKGSKAKHED 455
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 397 SPRKRSSVWLMRQRSTETRMTSKRRPSRPRMHWNLTA*H-EVYH 525
S R+R S S+ +R +K PS R H+ L H E+ H
Sbjct: 288 SKRRRVSARASSSASSSSRTQAKSIPSHERTHYRLIRQHPELEH 331
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 8.4
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Frame = +3
Query: 303 DIDANGILNVSAIEKSTNKENKIT----ITNDKGRLSKEEIER-----MVNEAE-KYRNE 452
D+D VS IEK+T + +T N G+L K EIE ++N+ E
Sbjct: 1209 DLDTEASPVVSTIEKTTKGDVSVTEEQQSANIDGQLEKPEIEESKKPDVLNQVSLSIEEE 1268
Query: 453 DDKQKETIQAKNA 491
K KE+ NA
Sbjct: 1269 KPKNKESEVDNNA 1281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,359
Number of Sequences: 5004
Number of extensions: 40688
Number of successful extensions: 207
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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