Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30651
(599 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111; Eukar... 102 7e-21
UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S riboso... 94 3e-18
UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27; Viri... 88 1e-16
UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2; Basidio... 87 3e-16
UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=... 82 1e-14
UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6; Trichom... 81 1e-14
UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=... 79 8e-14
UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26; Fungi/... 78 2e-13
UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=... 71 3e-11
UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9; Oligohy... 70 5e-11
UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5; Ascomyc... 69 1e-10
UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n... 62 7e-09
UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1; ... 60 5e-08
UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillar... 58 1e-07
UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoe... 57 4e-07
UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n... 55 1e-06
UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal ... 54 3e-06
UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1; Encepha... 50 3e-05
UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n... 42 0.015
UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza s... 39 0.10
UniRef50_A6PBF3 Cluster: Diguanylate cyclase precursor; n=1; She... 35 1.7
UniRef50_Q7KTI0 Cluster: CG17608-PA, isoform A; n=3; Sophophora|... 34 2.2
UniRef50_Q1RS46 Cluster: Polyketide synthase type I; n=3; Bacill... 34 2.9
UniRef50_Q17A66 Cluster: Mixed-lineage leukemia protein, mll; n=... 34 2.9
UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1; Arabido... 33 3.9
UniRef50_Q54070 Cluster: Poly(3-hydroxybutyrate) depolymerase; n... 33 6.8
UniRef50_A6GTV9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.8
UniRef50_Q4Y1F8 Cluster: Nucleolar GTP-binding protein 1, putati... 33 6.8
>UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111;
Eukaryota|Rep: 60S ribosomal protein L13 - Homo sapiens
(Human)
Length = 211
Score = 102 bits (244), Expect = 7e-21
Identities = 46/76 (60%), Positives = 52/76 (68%)
Frame = +3
Query: 30 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 209
N M+ HFHKDWQR V TWFNQPAR+ RR++ R +RPIVRCPTVR
Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 210 YHTKVRAGRGFTLREL 257
YHTKVRAGRGF+L EL
Sbjct: 66 YHTKVRAGRGFSLEEL 81
Score = 101 bits (243), Expect = 1e-20
Identities = 53/94 (56%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEE 439
AG++ ARTIGI+VDPRRRNKS ESLQ NVQR+KEYR++LILFP K KG+++ EE
Sbjct: 84 AGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143
Query: 440 RKLATQLRGPLMPVQQPAPKSVADLSLKMKRTSK 541
KLATQL GP+MPV+ K A + + ++ K
Sbjct: 144 LKLATQLTGPVMPVRNVYKKEKARVITEEEKNFK 177
Score = 37.5 bits (83), Expect = 0.24
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1
Query: 508 RPITEDEKNFKAYQYLIGARSIAKLVGIRA 597
R ITE+EKNFKA+ L AR+ A+L GIRA
Sbjct: 167 RVITEEEKNFKAFASLRMARANARLFGIRA 196
>UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S ribosomal
protein L13; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to 60S ribosomal protein L13 - Tribolium
castaneum
Length = 198
Score = 93.9 bits (223), Expect = 3e-18
Identities = 44/80 (55%), Positives = 52/80 (65%)
Frame = +3
Query: 18 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 197
M + NNMIPNGHFHK WQ+ VK WFNQP ++ RRK R LRP+V C
Sbjct: 1 MVRHNNMIPNGHFHKKWQQKVKLWFNQPMKKLRRKALR-AKKSRQLAPKPTELLRPLVHC 59
Query: 198 PTVRYHTKVRAGRGFTLREL 257
P+ RY +KVRAGRGFT +EL
Sbjct: 60 PSERYKSKVRAGRGFTFQEL 79
Score = 63.7 bits (148), Expect = 3e-09
Identities = 29/53 (54%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGK-KVLK 418
AG++ +AR+ G+AVDPRRRN+ ES+ N+QR+ EY++RLI P K KVLK
Sbjct: 82 AGMSDKYARSFGVAVDPRRRNRCTESIAANIQRLIEYKSRLIFLPDSKNKVLK 134
>UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27;
Viridiplantae|Rep: 60S ribosomal protein L13-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 206
Score = 88.2 bits (209), Expect = 1e-16
Identities = 40/78 (51%), Positives = 50/78 (64%)
Frame = +3
Query: 24 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 204 VRYHTKVRAGRGFTLREL 257
++Y+ KVRAG+GFTL EL
Sbjct: 62 LKYNMKVRAGKGFTLEEL 79
Score = 75.8 bits (178), Expect = 7e-13
Identities = 36/74 (48%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEE 439
AG+ A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + ++V G++ EE
Sbjct: 82 AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEE 141
Query: 440 RKLATQLRGPLMPV 481
ATQ++G MP+
Sbjct: 142 LANATQVQGDYMPI 155
>UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2;
Basidiomycota|Rep: 60S ribosomal protein L13 - Ustilago
maydis (Smut fungus)
Length = 209
Score = 87.0 bits (206), Expect = 3e-16
Identities = 39/78 (50%), Positives = 50/78 (64%)
Frame = +3
Query: 24 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
K NN++ N HF KDWQR VK WF+QP + RR+ R LRP VRCPT
Sbjct: 4 KHNNILHNNHFRKDWQRRVKVWFDQPGAKKRRRTAR-EAKAAKLGLRPVQLLRPAVRCPT 62
Query: 204 VRYHTKVRAGRGFTLREL 257
+RY+TK+R+GRGFT+ E+
Sbjct: 63 LRYNTKIRSGRGFTIEEV 80
Score = 66.1 bits (154), Expect = 6e-10
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPK 400
AAGL +AR++GI VD RRRNKS ESL++NV+RIK Y+ARL++ PK
Sbjct: 82 AAGLGKKYARSVGIPVDHRRRNKSEESLKLNVERIKAYQARLVVIPK 128
>UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=7;
Trypanosomatidae|Rep: 60S ribosomal protein L13,
putative - Trypanosoma brucei
Length = 229
Score = 81.8 bits (193), Expect = 1e-14
Identities = 42/69 (60%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEE 436
AAG+ P +ARTIGI VD RR+NKS E + INVQR+K Y ++L+LFP KK KG+A EE
Sbjct: 98 AAGVKPRYARTIGIRVDRRRKNKSEEGMNINVQRLKTYMSKLVLFPLNRKKPQKGDATEE 157
Query: 437 ERKLATQLR 463
E K ATQ R
Sbjct: 158 EVKAATQDR 166
Score = 68.1 bits (159), Expect = 1e-10
Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Frame = +3
Query: 18 MGKGNNMIPNGHFHKDWQRF------VKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXL 179
M KGNN IP+ H K W VK +FNQPA++ RR++ R+ L
Sbjct: 12 MPKGNNAIPHVHQRKHWNPCSSQKGNVKVFFNQPAQKQRRRRLRLLKAKKIFPRPLKA-L 70
Query: 180 RPIVRCPTVRYHTKVRAGRGFTLREL 257
RP V CPTVRY+ K R GRGF+L EL
Sbjct: 71 RPQVNCPTVRYNMKRRLGRGFSLEEL 96
>UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L13
- Trichomonas vaginalis G3
Length = 210
Score = 81.4 bits (192), Expect = 1e-14
Identities = 40/82 (48%), Positives = 47/82 (57%)
Frame = +3
Query: 12 VKMGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIV 191
++M NN IPN H K W VKT+F+ PAR RR+ R LRPIV
Sbjct: 20 LEMVAKNNQIPNDHLRKYWYHRVKTYFDDPARAQRRRNARNLRAKKIAPRPAEGPLRPIV 79
Query: 192 RCPTVRYHTKVRAGRGFTLREL 257
RCPTVRY+ K R GRGFT +EL
Sbjct: 80 RCPTVRYNMKTRLGRGFTPKEL 101
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKV 412
AAG +P AR GIAVD RR + ++ NV+R++ Y+ARLI KG+ V
Sbjct: 103 AAGFDPALARFQGIAVDARRAHSKDAMVKQNVERLQAYKARLIKVKKGETV 153
>UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L13, putative
- Cryptosporidium parvum Iowa II
Length = 207
Score = 79.0 bits (186), Expect = 8e-14
Identities = 37/76 (48%), Positives = 48/76 (63%)
Frame = +3
Query: 30 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 209
NN+IPN H+HK+++R++KTW+NQP R+ R+ R LRPIV PT R
Sbjct: 4 NNVIPNVHYHKNYKRWIKTWYNQPGRKQSRRIAR-QKAVAEAGFRPVGMLRPIVHPPTQR 62
Query: 210 YHTKVRAGRGFTLREL 257
Y+ K R GRGFTL EL
Sbjct: 63 YNMKTRLGRGFTLEEL 78
Score = 54.0 bits (124), Expect = 3e-06
Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEA 427
A G+N A +IGIAVD RR + S E+ QINV R+K+Y ++L P KGKK KG A
Sbjct: 80 ACGINKKAAMSIGIAVDHRRTDLSEETFQINVDRLKKYINGIVLQPRKGKKTKKGFA 136
>UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 243
Score = 77.8 bits (183), Expect = 2e-13
Identities = 35/68 (51%), Positives = 46/68 (67%)
Frame = +3
Query: 54 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 233
FHKDWQR V+ F+QP R++RR++ R+ LRP+VRCPTV+Y+ +VR G
Sbjct: 31 FHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDK-LRPVVRCPTVKYNRRVRVG 89
Query: 234 RGFTLREL 257
RGFTL EL
Sbjct: 90 RGFTLAEL 97
Score = 59.3 bits (137), Expect = 7e-08
Identities = 29/46 (63%), Positives = 35/46 (76%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPK 400
AG+ ART+GIAVD RR N S ESL NV R+K+Y+ARLILFP+
Sbjct: 100 AGIPKKLARTVGIAVDHRRVNYSKESLVANVARLKDYKARLILFPR 145
>UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=5;
Plasmodium|Rep: 60S ribosomal protein L13, putative -
Plasmodium chabaudi
Length = 215
Score = 70.5 bits (165), Expect = 3e-11
Identities = 43/118 (36%), Positives = 59/118 (50%)
Frame = +3
Query: 30 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 209
NN++PN H HK WQR+V+ FN+ +R +R+ R L P+V CPT R
Sbjct: 5 NNVLPNVHLHKWWQRYVRVDFNKNIKRKQRRLLR-EKRRKQNGGTPIEKLHPVVHCPTQR 63
Query: 210 YHTKVRAGRGFTLRELGPQD*TQYLPERLELL*IPVDATSLLNHCKSMFKE*RNTERV 383
Y+ K R G+GFTL E+ + P + I VD N C+ KE N ER+
Sbjct: 64 YNYKTRLGKGFTLEEIKA---VKLTPSAARSIGIIVDKRR-KNRCEESLKE--NAERL 115
Score = 46.4 bits (105), Expect = 5e-04
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGK 406
A L P AR+IGI VD RR+N+ ESL+ N +R+++Y L++ P K
Sbjct: 81 AVKLTPSAARSIGIIVDKRRKNRCEESLKENAERLQKYLNSLVMIPLKK 129
>UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9;
Oligohymenophorea|Rep: 60S ribosomal protein L13 -
Paramecium tetraurelia
Length = 208
Score = 69.7 bits (163), Expect = 5e-11
Identities = 34/78 (43%), Positives = 46/78 (58%)
Frame = +3
Query: 24 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
K N +PN H K W RFVKT++NQPA + RR+Q R LRP+VR T
Sbjct: 2 KHNQQLPNAHMRKHWTRFVKTFYNQPAAK-RRRQLRRRAQALSASPRPVELLRPVVRGQT 60
Query: 204 VRYHTKVRAGRGFTLREL 257
++Y++ + GRGF+L EL
Sbjct: 61 IKYNSVQKLGRGFSLIEL 78
Score = 62.9 bits (146), Expect = 6e-09
Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPK--GKK---VLKGEA 427
AGLN FART+GI+VD RRRN + E L NV+R+K Y ++L+L+P+ GK V+K
Sbjct: 81 AGLNAAFARTVGISVDHRRRNLNQEELNNNVKRLKAYLSKLVLYPRVAGKPKNGVVKDST 140
Query: 428 NEEERKLATQLRGPLMPVQQPAPK 499
NE Q P + Q PK
Sbjct: 141 NEVVAHPVAQNTNPEVLTFQRTPK 164
>UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5;
Ascomycota|Rep: 60S ribosomal protein L13 - Candida
albicans (Yeast)
Length = 202
Score = 68.5 bits (160), Expect = 1e-10
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = +3
Query: 45 NGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 224
N HF K WQ V+ F+Q ++ R+Q+R+ LRP+VR PTV+Y+ KV
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 225 RAGRGFTLREL 257
RAGRGFTL EL
Sbjct: 70 RAGRGFTLAEL 80
Score = 68.5 bits (160), Expect = 1e-10
Identities = 36/81 (44%), Positives = 53/81 (65%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEE 439
A G+ P +ARTIGI+VD RR+NKS E+ NV R++EY+++L++F K K + + E+
Sbjct: 82 AVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQV 141
Query: 440 RKLATQLRGPLMPVQQPAPKS 502
AT PV+QPAP+S
Sbjct: 142 DVSAT------FPVEQPAPES 156
>UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n=4;
Piroplasmida|Rep: 60S ribosomal protein L13e, putative -
Theileria parva
Length = 205
Score = 62.5 bits (145), Expect = 7e-09
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEA 427
AGL AR++G+AVD RR NK ESL +NV R+K Y ++L+LFP+ K KG A
Sbjct: 82 AGLGKKVARSVGVAVDHRRTNKCAESLNLNVNRLKTYLSKLVLFPRKKHAKKGFA 136
Score = 54.8 bits (126), Expect = 1e-06
Identities = 33/80 (41%), Positives = 43/80 (53%)
Frame = +3
Query: 18 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 197
M K NNM+ + H K RFVK NQ ++ RR+ R LRP+V
Sbjct: 1 MVKHNNMLSDVHRVKCSHRFVKPVLNQAGKKKRRRLAR-QRKAAASGLTPTGYLRPLVHM 59
Query: 198 PTVRYHTKVRAGRGFTLREL 257
P+ RY+ K+R GRGFTL+EL
Sbjct: 60 PSRRYNYKLRFGRGFTLQEL 79
>UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 70
Score = 59.7 bits (138), Expect = 5e-08
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +3
Query: 39 IPNGHFHKDWQRFVKTWFNQPARRYRRK 122
+PN HFHKDWQR+VKTWFNQP R+ RR+
Sbjct: 12 LPNAHFHKDWQRYVKTWFNQPGRKLRRQ 39
>UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillardia
theta|Rep: 60S ribosomal protein L13 - Guillardia theta
(Cryptomonas phi)
Length = 127
Score = 58.4 bits (135), Expect = 1e-07
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 48 GHFHKDWQRFVKTWFNQPARRY-RRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 224
GHF K W+ V T FNQP + RRK + L+P+V+CPT ++TK+
Sbjct: 10 GHFRKKWKNLVITNFNQPILKIKRRKIRKNKKKNFLKKAIFYKKLKPLVKCPTRMHNTKI 69
Query: 225 RAGRGFTLREL 257
+ GRGF+++E+
Sbjct: 70 KLGRGFSIQEI 80
>UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoeba
histolytica|Rep: 60S ribosomal protein L13 - Entamoeba
histolytica
Length = 138
Score = 56.8 bits (131), Expect = 4e-07
Identities = 28/68 (41%), Positives = 37/68 (54%)
Frame = +3
Query: 54 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 233
F KDW+ V TW QP R+ RR Q R+ L+P V C R++ K+R G
Sbjct: 12 FGKDWRSKVHTWVQQPFRKIRRHQTRV-EKAKSVFPATIKSLKPSVHCMNQRFNYKLRLG 70
Query: 234 RGFTLREL 257
RGF+L+EL
Sbjct: 71 RGFSLKEL 78
Score = 48.8 bits (111), Expect = 1e-04
Identities = 26/52 (50%), Positives = 32/52 (61%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVL 415
AA ++ ARTIGIAVDPRR+ S E L N QR+ EY RL L K++
Sbjct: 80 AAKIDKNLARTIGIAVDPRRKESSKECLTRNAQRLTEYMNRLCLKSVSVKIV 131
>UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC2213 UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 54.8 bits (126), Expect = 1e-06
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 177 LRPIVRCPTVRYHTKVRAGRGFTLREL 257
+RPIVRCPTVRYHTKVR GRGF+L E+
Sbjct: 13 IRPIVRCPTVRYHTKVRGGRGFSLEEI 39
Score = 41.9 bits (94), Expect = 0.011
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEER 442
AG++ ARTI I+VDP+++ K E + +R+ E + I++PK +K + + +E +
Sbjct: 42 AGIHKKMARTIDISVDPKKKKKKKERKKEKNERVTETNQKDIIYPKREKEREKKGMKEGK 101
Query: 443 K 445
K
Sbjct: 102 K 102
>UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal
protein L13 isoform 4; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to ribosomal protein L13 isoform 4 -
Canis familiaris
Length = 102
Score = 54.0 bits (124), Expect = 3e-06
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +3
Query: 30 NNMIPNGHFHKDWQRFVKTWFNQPARRYRR 119
N MI HFHKDWQR V TWFNQPAR+ RR
Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRR 35
>UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13
- Encephalitozoon cuniculi
Length = 163
Score = 50.4 bits (115), Expect = 3e-05
Identities = 27/77 (35%), Positives = 36/77 (46%)
Frame = +3
Query: 24 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
KGN+ +PN HF K + + P + R + LRPIVRCPT
Sbjct: 2 KGNHALPNNHFRKTSLKI--RIHHDPETKARVMAEKKLRKAKALFPMPLKKLRPIVRCPT 59
Query: 204 VRYHTKVRAGRGFTLRE 254
++Y+ R GRGFT E
Sbjct: 60 IKYNRNERLGRGFTAAE 76
Score = 45.2 bits (102), Expect = 0.001
Identities = 30/78 (38%), Positives = 43/78 (55%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEER 442
AGL+ AR +GIAVD RRR+ + E+ NV+RIK Y ++ ++ K EA E
Sbjct: 80 AGLDYRHARRLGIAVDLRRRDTNQEAFDKNVERIKTYLGKITIYESVK-----EARESGA 134
Query: 443 KLATQLRGPLMPVQQPAP 496
K T+ +MP +P P
Sbjct: 135 KPYTK---EIMPFVKPKP 149
>UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 05 contig 1, DNA
sequence - Ostreococcus tauri
Length = 527
Score = 41.5 bits (93), Expect = 0.015
Identities = 20/34 (58%), Positives = 21/34 (61%)
Frame = -2
Query: 256 NSRRVNPLPARTLVWYRTVGHRTIGRNGPAAGRG 155
NS V P P R L YR VG TIGR+ PA GRG
Sbjct: 410 NSSSVKPRPRRVLKLYRCVGGCTIGRSAPATGRG 443
>UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza
sativa|Rep: 60S ribosomal protein L13 - Oryza sativa
subsp. indica (Rice)
Length = 138
Score = 38.7 bits (86), Expect = 0.10
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 183 PIVRCPTVRYHTKVRAGRGFTLREL 257
PIV+C T++Y+ K RAGRGF L EL
Sbjct: 47 PIVQCQTLKYNMKSRAGRGFILEEL 71
>UniRef50_A6PBF3 Cluster: Diguanylate cyclase precursor; n=1;
Shewanella sediminis HAW-EB3|Rep: Diguanylate cyclase
precursor - Shewanella sediminis HAW-EB3
Length = 467
Score = 34.7 bits (76), Expect = 1.7
Identities = 24/85 (28%), Positives = 44/85 (51%)
Frame = -2
Query: 430 IGLTLQHLFAFREQYETRSVFLYSLNIDLQ*FNRLVASTGIYSNSNRSGKYWVQSCGPNS 251
+G +L ++ R+ +R+ L LN++LQ + + TGIY NR +Y+++S
Sbjct: 273 LGFSLLYILQLRKTVSSRTAELRQLNLELQHLASIDSLTGIY---NR--RYFIRSLKDAC 327
Query: 250 RRVNPLPARTLVWYRTVGHRTIGRN 176
R +N + TL+ + +TI N
Sbjct: 328 RTMNEEASLTLLLFDIDKFKTINDN 352
>UniRef50_Q7KTI0 Cluster: CG17608-PA, isoform A; n=3;
Sophophora|Rep: CG17608-PA, isoform A - Drosophila
melanogaster (Fruit fly)
Length = 271
Score = 34.3 bits (75), Expect = 2.2
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +2
Query: 305 VDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEA---NEEERKLATQLRGPLM 475
+D R+ S+ SLQ + I+E +L+LFP+G + K + +A Q + P+
Sbjct: 141 IDRSRKTDSINSLQKEAKAIQERNCKLLLFPEGTRNSKDSLLPFKKGSFHIALQGKSPVQ 200
Query: 476 PV 481
PV
Sbjct: 201 PV 202
>UniRef50_Q1RS46 Cluster: Polyketide synthase type I; n=3;
Bacillus|Rep: Polyketide synthase type I - Bacillus
amyloliquefaciens
Length = 1917
Score = 33.9 bits (74), Expect = 2.9
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +2
Query: 350 NVQRIKEYRARLILF-----PKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVAD 511
N +R+KEY ARL++F P+G L + + + +L LRG L V A SV D
Sbjct: 895 NPERLKEYAARLLMFLKDEAPEGSGPLYDKIDTMQNQLEDALRGVLAEVLHVASGSVDD 953
>UniRef50_Q17A66 Cluster: Mixed-lineage leukemia protein, mll; n=2;
Culicidae|Rep: Mixed-lineage leukemia protein, mll -
Aedes aegypti (Yellowfever mosquito)
Length = 2874
Score = 33.9 bits (74), Expect = 2.9
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 386 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAP-KSVADLSLKMKRTSKLI 547
I FP G +V+K E+NEE++ + + P++P+ P P + +SL R+ LI
Sbjct: 2016 IHFP-GLRVIKEESNEEDQTMIFKRMSPIIPIVAPIPIRLKKGISLSSDRSLSLI 2069
>UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1;
Arabidopsis thaliana|Rep: 60S ribosomal protein L13 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 87
Score = 33.5 bits (73), Expect = 3.9
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 177 LRPIVRCPTVRYHTKVRAGRGFTLREL 257
LRP+V T++Y+ KV +GFTL EL
Sbjct: 52 LRPVVHGQTLKYNMKVSTXKGFTLEEL 78
>UniRef50_Q54070 Cluster: Poly(3-hydroxybutyrate) depolymerase; n=1;
Streptomyces exfoliatus|Rep: Poly(3-hydroxybutyrate)
depolymerase - Streptomyces exfoliatus (Streptomyces
hydrogenans)
Length = 488
Score = 32.7 bits (71), Expect = 6.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 361 SLNIDLQ*FNRLVASTGIYSNSNRSGKYWVQSCGPNS 251
++N DL + R + +Y NS+ SG WV GPNS
Sbjct: 143 AVNDDLATYYRDFGADVVYDNSSASGHAWVSPLGPNS 179
>UniRef50_A6GTV9 Cluster: Putative uncharacterized protein; n=1;
Limnobacter sp. MED105|Rep: Putative uncharacterized
protein - Limnobacter sp. MED105
Length = 130
Score = 32.7 bits (71), Expect = 6.8
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = -2
Query: 379 RSVFLYSLNIDLQ*FNRLVASTGIYSNSNRSGK---YWVQSCGPNSRRVN 239
R+ L ++N+++ N++ A T + + R+GK YWV + G ++VN
Sbjct: 63 RTTLLNAVNLNISRLNKVCADTHVGNREKRNGKGGQYWVNALGGMLKKVN 112
>UniRef50_Q4Y1F8 Cluster: Nucleolar GTP-binding protein 1, putative;
n=6; Plasmodium|Rep: Nucleolar GTP-binding protein 1,
putative - Plasmodium chabaudi
Length = 682
Score = 32.7 bits (71), Expect = 6.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 308 DPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEAN 430
DP R+ + +S +QR K Y+ ++ + + KK KGEA+
Sbjct: 618 DPTRKMRIYQSTSTEIQRKKAYKLNIVAYRQIKKGTKGEAD 658
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,599,776
Number of Sequences: 1657284
Number of extensions: 11801208
Number of successful extensions: 30140
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30118
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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