Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30651
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    94   1e-20
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   0.91 
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   6.4  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   6.4  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   8.5  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 42/73 (57%), Positives = 50/73 (68%)
 Frame = +3

Query: 39  IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 218
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 219 KVRAGRGFTLREL 257
           KVRAGRGFTL EL
Sbjct: 68  KVRAGRGFTLEEL 80



 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
 Frame = +2

Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEE 436
           AAG++   A TIGI VD RRRN+S ESLQ NV+RIK Y A LI+FP K  +  KG+A + 
Sbjct: 82  AAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDV 141

Query: 437 ERKLATQLRGPLMPVQQPAPKSVADLSLKMK 529
                T +   ++P+ Q A +    ++ + K
Sbjct: 142 SGAEQTDV-AAVLPITQEAVEEAKPITEEAK 171



 Score = 32.7 bits (71), Expect = 0.042
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 508 RPITEDEKNFKAYQYLIGARSIAKLVGIRA 597
           +PITE+ KNF A+  L   R+ A+  G RA
Sbjct: 164 KPITEEAKNFNAFSTLSNERAYARYAGARA 193


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -1

Query: 251  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 132
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 21/73 (28%), Positives = 28/73 (38%)
 Frame = -2

Query: 367 LYSLNIDLQ*FNRLVASTGIYSNSNRSGKYWVQSCGPNSRRVNPLPARTLVWYRTVGHRT 188
           +Y++  DL   NR   S G   N N  G  +       S   NP  + T + Y    + T
Sbjct: 1   MYNVRGDL---NRKTPSDG---NVNEIGSMYASRDTSTSSFTNPTDSSTRLLYNNASNAT 54

Query: 187 IGRNGPAAGRGAT 149
                 AAG G T
Sbjct: 55  FSSAALAAGVGGT 67


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 451 YTATWSINASSTACS*ISCRPITEDEKNFKAYQYLIGARSIAKLV 585
           Y   W +    T    IS  P    +K+ K Y Y+I  + +AK V
Sbjct: 219 YEWYWRLEPEVTFSCDISYDPFYYMDKHNKVYGYVIAIKELAKTV 263


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 43  LMDISTRIGKDLLKLGLTSQLDDTAES 123
           L+DIS R G+D     L S+L D  +S
Sbjct: 556 LLDISKRKGRDSFVAALNSRLKDIKDS 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,072
Number of Sequences: 5004
Number of extensions: 49709
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)