Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30651
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 97 7e-21
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 97 7e-21
10_08_0620 - 19321612-19323237 31 0.93
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 29 3.8
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 29 3.8
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 5.0
10_08_0694 - 19929918-19930292,19930633-19930866 28 6.6
03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849... 27 8.7
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237 27 8.7
02_04_0147 + 20194244-20195717,20195953-20195969 27 8.7
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 97.5 bits (232), Expect = 7e-21
Identities = 45/80 (56%), Positives = 53/80 (66%)
Frame = +3
Query: 18 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 197
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 198 PTVRYHTKVRAGRGFTLREL 257
T++Y+ K RAGRGFTL EL
Sbjct: 61 QTLKYNMKSRAGRGFTLEEL 80
Score = 85.4 bits (202), Expect = 3e-17
Identities = 41/83 (49%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEE 436
AAG+ FA TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +KV G++ E
Sbjct: 82 AAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTPE 141
Query: 437 ERKLATQLRGPLMPVQQPAPKSV 505
E ATQ++G MP+ + +SV
Sbjct: 142 ELATATQVQGDYMPITRGEKRSV 164
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 97.5 bits (232), Expect = 7e-21
Identities = 45/80 (56%), Positives = 53/80 (66%)
Frame = +3
Query: 18 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 197
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 198 PTVRYHTKVRAGRGFTLREL 257
T++Y+ K RAGRGFTL EL
Sbjct: 61 QTLKYNMKSRAGRGFTLEEL 80
Score = 84.2 bits (199), Expect = 7e-17
Identities = 40/83 (48%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEE 436
AAG+ +A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +KV G++ E
Sbjct: 82 AAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTAE 141
Query: 437 ERKLATQLRGPLMPVQQPAPKSV 505
E ATQ++G MP+ + +SV
Sbjct: 142 ELATATQVQGDYMPIARGEKRSV 164
>10_08_0620 - 19321612-19323237
Length = 541
Score = 30.7 bits (66), Expect = 0.93
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKG--KKVLKGEANE 433
A +P +R D +RR+ V L I R AR L P+G K + +
Sbjct: 4 AVAASPAQSRKTETYTDTKRRD-DVRGLNIAAGRAVAAAARTSLGPRGMDKMISSSSSGG 62
Query: 434 EERKLATQLRGPL---MPVQQPAPKSVADLS 517
++ + T + MP+ QPA + +ADLS
Sbjct: 63 DQAVIITNDGATILSRMPLLQPAARMLADLS 93
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 311 DLQQFQSFGQILGSILRP 258
DL+ QS GQI+G +LRP
Sbjct: 54 DLKSLQSVGQIIGEVLRP 71
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 311 DLQQFQSFGQILGSILRP 258
DL+ QS GQI+G +LRP
Sbjct: 53 DLKSLQSVGQIIGEVLRP 70
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 332 VESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQL 460
++SL+ VQR+ E R R +L P G ++E R A +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224
>10_08_0694 - 19929918-19930292,19930633-19930866
Length = 202
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +2
Query: 317 RRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQ 487
R N + + + + K LI+ P G +VL+G E++ K A ++ L +++
Sbjct: 54 RSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEE 110
>03_05_1138 +
30684014-30684386,30684480-30684865,30684870-30684962,
30684963-30685108,30685211-30685454,30685562-30685666,
30685774-30685956,30686052-30686738
Length = 738
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 152 YGLS-FLYSILLSAVSSSWLVKPSFNKSLPILVEMSIRYHIISLA 21
YG + F +++ L A + L+ P F K LP IR+ ++ L+
Sbjct: 178 YGATIFPHNVALGATRQAALLSPRFAKLLPFFTNREIRFCLMFLS 222
>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
Length = 572
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 149 GLSFLYSILLSAVSSSWLVKPSFNKSLPILVEMSIRYHIIS 27
G++ ++ L+ VSSSW++ P ++ +V IR + S
Sbjct: 264 GVNAVFWSSLARVSSSWVISPLMGAAVSFIVYKGIRRFVYS 304
>02_04_0147 + 20194244-20195717,20195953-20195969
Length = 496
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 188 YRT*RPSCRTWSYGLSF 138
Y T RP CR W + LSF
Sbjct: 264 YHTARPGCRYWVFSLSF 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,046,580
Number of Sequences: 37544
Number of extensions: 323256
Number of successful extensions: 705
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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