BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30651 (599 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 109 2e-24 SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35) 34 0.10 SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6 SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 3.8 SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8) 28 5.0 SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6 SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 28 6.6 >SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) Length = 600 Score = 109 bits (262), Expect = 2e-24 Identities = 49/78 (62%), Positives = 56/78 (71%) Frame = +3 Query: 24 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203 K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+ R LRPIVRCPT Sbjct: 4 KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63 Query: 204 VRYHTKVRAGRGFTLREL 257 +Y+TKVRAGRGFTL EL Sbjct: 64 FKYNTKVRAGRGFTLDEL 81 Score = 82.6 bits (195), Expect = 2e-16 Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 1/77 (1%) Frame = +2 Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEE 436 AAG+ A TIGIAVD RR+N+S ESLQ NVQR+KEY+++LI+FP K K +G++ Sbjct: 83 AAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSKLIVFPRKANKPKQGDSEAA 142 Query: 437 ERKLATQLRGPLMPVQQ 487 + A QL+GP+MP+ Q Sbjct: 143 DLANAVQLQGPVMPIPQ 159 >SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35) Length = 440 Score = 33.9 bits (74), Expect = 0.10 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +2 Query: 299 IAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQ 457 IA+ R + + + RI+E R ++F GK V G +EE+ KLA + Sbjct: 301 IALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353 >SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1967 Score = 29.9 bits (64), Expect = 1.6 Identities = 20/72 (27%), Positives = 35/72 (48%) Frame = +2 Query: 335 ESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVADL 514 ESL++ ++IKE +A+L+ +++ + E +E LR L S L Sbjct: 1124 ESLEVANKKIKELQAQLL---TARELTQQECVSKEASEVANLRDALEKANSKVAHSEEIL 1180 Query: 515 SLKMKRTSKLIN 550 +LK R +L+N Sbjct: 1181 ALKAARLKELVN 1192 >SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) Length = 3489 Score = 28.7 bits (61), Expect = 3.8 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +2 Query: 404 KKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVADLSLKMK 529 KK LK N+E ++L L+ L VQQ + K DL +K++ Sbjct: 1401 KKELKSLHNKELQELQNNLKQQLAVVQQKSDKLSEDLKVKIE 1442 >SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8) Length = 91 Score = 28.3 bits (60), Expect = 5.0 Identities = 21/57 (36%), Positives = 29/57 (50%) Frame = +2 Query: 284 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLAT 454 AR I +A+ RR + S+Q + EY R KG+KV KG +ERK A+ Sbjct: 17 ARRIRLAIFSRRLKFARTSVQNRQRNQAEYSER-----KGRKVRKGRKVRKERKPAS 68 >SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 462 Score = 27.9 bits (59), Expect = 6.6 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -1 Query: 149 GLSFLYSILLSAVSSSWLVKPSFNKSLPILVEMSIRYHIISLAH 18 G F +IL+ A SS L++P F+ SLP+ + + +L H Sbjct: 195 GFDFGKAILVKASLSSDLIRPGFDVSLPLFPKTHPHKDLGNLPH 238 >SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) Length = 1003 Score = 27.9 bits (59), Expect = 6.6 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 301 NSNRSGKYWVQSCGPNSRRVNPLPARTLVWYRT 203 NS+ +G+ QS GP+ NPL R L ++ T Sbjct: 214 NSSLTGESEPQSRGPDCTHENPLETRNLAFFST 246 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,234,774 Number of Sequences: 59808 Number of extensions: 352385 Number of successful extensions: 934 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 840 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 928 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1451595000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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