Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30651
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             109   2e-24
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   34   0.10 
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     29   3.8  
SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)              28   5.0  
SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                  28   6.6  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  109 bits (262), Expect = 2e-24
 Identities = 49/78 (62%), Positives = 56/78 (71%)
 Frame = +3

Query: 24  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
           K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R               LRPIVRCPT
Sbjct: 4   KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63

Query: 204 VRYHTKVRAGRGFTLREL 257
            +Y+TKVRAGRGFTL EL
Sbjct: 64  FKYNTKVRAGRGFTLDEL 81



 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
 Frame = +2

Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEE 436
           AAG+    A TIGIAVD RR+N+S ESLQ NVQR+KEY+++LI+FP K  K  +G++   
Sbjct: 83  AAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSKLIVFPRKANKPKQGDSEAA 142

Query: 437 ERKLATQLRGPLMPVQQ 487
           +   A QL+GP+MP+ Q
Sbjct: 143 DLANAVQLQGPVMPIPQ 159


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 299 IAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQ 457
           IA+  R    + +     + RI+E R   ++F  GK V  G  +EE+ KLA +
Sbjct: 301 IALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353


>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1967

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +2

Query: 335  ESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVADL 514
            ESL++  ++IKE +A+L+     +++ + E   +E      LR  L         S   L
Sbjct: 1124 ESLEVANKKIKELQAQLL---TARELTQQECVSKEASEVANLRDALEKANSKVAHSEEIL 1180

Query: 515  SLKMKRTSKLIN 550
            +LK  R  +L+N
Sbjct: 1181 ALKAARLKELVN 1192


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 404  KKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVADLSLKMK 529
            KK LK   N+E ++L   L+  L  VQQ + K   DL +K++
Sbjct: 1401 KKELKSLHNKELQELQNNLKQQLAVVQQKSDKLSEDLKVKIE 1442


>SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)
          Length = 91

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +2

Query: 284 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLAT 454
           AR I +A+  RR   +  S+Q   +   EY  R     KG+KV KG    +ERK A+
Sbjct: 17  ARRIRLAIFSRRLKFARTSVQNRQRNQAEYSER-----KGRKVRKGRKVRKERKPAS 68


>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 149 GLSFLYSILLSAVSSSWLVKPSFNKSLPILVEMSIRYHIISLAH 18
           G  F  +IL+ A  SS L++P F+ SLP+  +      + +L H
Sbjct: 195 GFDFGKAILVKASLSSDLIRPGFDVSLPLFPKTHPHKDLGNLPH 238


>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1003

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 301 NSNRSGKYWVQSCGPNSRRVNPLPARTLVWYRT 203
           NS+ +G+   QS GP+    NPL  R L ++ T
Sbjct: 214 NSSLTGESEPQSRGPDCTHENPLETRNLAFFST 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,234,774
Number of Sequences: 59808
Number of extensions: 352385
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)