Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30651
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    29   0.046
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    29   0.046
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.43 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.0  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 28.7 bits (61), Expect = 0.046
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 298 SNRSGKYWVQSCGPNSRRVNPLPARTLVWYRTVGHRTI 185
           +N      V  CG NS  +N  PAR +   R+V  +TI
Sbjct: 294 ANEVATILVDDCGCNSTMLNENPARVMACMRSVDAKTI 331


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 28.7 bits (61), Expect = 0.046
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 298 SNRSGKYWVQSCGPNSRRVNPLPARTLVWYRTVGHRTI 185
           +N      V  CG NS  +N  PAR +   R+V  +TI
Sbjct: 294 ANEVATILVDDCGCNSTMLNENPARVMACMRSVDAKTI 331


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 127 FCFLRYRRAGWLNQVLTNLCQSLWKC 50
           FC+ R   A W N V  NL  SL KC
Sbjct: 538 FCYFRRNAATWKNAVRHNL--SLHKC 561


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 235 EDSLFVN*GRRIEPSICPNDWNCCRS 312
           ED++ V+  +  E  + P   NCCRS
Sbjct: 378 EDTMSVDRMQHCELHMQPRKKNCCRS 403


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 235 EDSLFVN*GRRIEPSICPNDWNCCRS 312
           ED++ V+  +  E  + P   NCCRS
Sbjct: 378 EDTMSVDRMQHCELHMQPRKKNCCRS 403


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 152 SSTSCSWAVTSY 187
           S + C+W +TSY
Sbjct: 66  SGSKCTWTITSY 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,393
Number of Sequences: 438
Number of extensions: 3417
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)