Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30651
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br...    90   9e-19
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br...    90   9e-19
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)            88   4e-18
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ...    82   3e-16
At3g44770.1 68416.m04820 hypothetical protein contains Pfam prof...    32   0.33 
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate...    29   1.8  
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4...    29   3.1  
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun...    29   3.1  
At5g12280.1 68418.m01444 hypothetical protein                          27   7.2  
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom...    27   7.2  
At5g02760.1 68418.m00218 protein phosphatase 2C family protein /...    27   9.5  

>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 90.2 bits (214), Expect = 9e-19
 Identities = 41/78 (52%), Positives = 50/78 (64%)
 Frame = +3

Query: 24  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 204 VRYHTKVRAGRGFTLREL 257
           ++Y+ KVR G+GFTL EL
Sbjct: 62  LKYNMKVRTGKGFTLEEL 79



 Score = 80.6 bits (190), Expect = 7e-16
 Identities = 41/92 (44%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
 Frame = +2

Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEE 436
           AAG+    A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L++FP + +KV  G++  E
Sbjct: 81  AAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPE 140

Query: 437 ERKLATQLRGPLMPVQQPAP-KSVADLSLKMK 529
           E   ATQ++G  +P+ +  P   +  L+ +MK
Sbjct: 141 ELANATQVQGDYLPIVREKPTMELVKLTSEMK 172


>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 90.2 bits (214), Expect = 9e-19
 Identities = 41/78 (52%), Positives = 50/78 (64%)
 Frame = +3

Query: 24  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 204 VRYHTKVRAGRGFTLREL 257
           ++Y+ KVR G+GFTL EL
Sbjct: 62  LKYNMKVRTGKGFTLEEL 79



 Score = 80.6 bits (190), Expect = 7e-16
 Identities = 41/92 (44%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
 Frame = +2

Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEE 436
           AAG+    A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L++FP + +KV  G++  E
Sbjct: 81  AAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPE 140

Query: 437 ERKLATQLRGPLMPVQQPAP-KSVADLSLKMK 529
           E   ATQ++G  +P+ +  P   +  L+ +MK
Sbjct: 141 ELANATQVQGDYLPIVREKPTMELVKLTSEMK 172


>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
          Length = 206

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 40/78 (51%), Positives = 50/78 (64%)
 Frame = +3

Query: 24  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
           K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 204 VRYHTKVRAGRGFTLREL 257
           ++Y+ KVRAG+GFTL EL
Sbjct: 62  LKYNMKVRAGKGFTLEEL 79



 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 36/74 (48%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
 Frame = +2

Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEE 439
           AG+    A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + ++V  G++  EE
Sbjct: 82  AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEE 141

Query: 440 RKLATQLRGPLMPV 481
              ATQ++G  MP+
Sbjct: 142 LANATQVQGDYMPI 155


>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
           ribosomal protein L13 (BBC1), Arabidopsis thaliana,
           gb:X75162
          Length = 206

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 38/78 (48%), Positives = 48/78 (61%)
 Frame = +3

Query: 24  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
           K NN+IPNGHF K W+ +VKT FNQPA + RR+  R               +RP+V   T
Sbjct: 2   KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61

Query: 204 VRYHTKVRAGRGFTLREL 257
           + Y+ KVRAG+GFTL EL
Sbjct: 62  LTYNMKVRAGKGFTLEEL 79



 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 34/80 (42%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
 Frame = +2

Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLK-GEANEE 436
           AAG+    A TIGI+VD  R+N+S+E  Q NVQR+K Y+A+L++FP+  + +K G++ ++
Sbjct: 81  AAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQ 140

Query: 437 ERKLATQLRGPLMPVQQPAP 496
           E   ATQ++   MP+ +  P
Sbjct: 141 ELANATQVQVDHMPIVREMP 160


>At3g44770.1 68416.m04820 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 505

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -2

Query: 265 CGPNSRRVNPLPARTLVWYRTVGHRTIGRNGPAAGRGATALAFFILFCFLRYRRAGWL 92
           CGPN+  +  L    L  Y+T+G + IG+   A   G  ALAF +++ F  +    WL
Sbjct: 425 CGPNNCIIFCLFDVALFGYKTIGFKRIGKE-LAMIYGFLALAFLLMYLFGFFFGVLWL 481


>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
           CDPK-related contains TIGRFAM TIGR01557: myb-like
           DNA-binding domain, SHAQKYF class; contains Pfam
           PF00249: Myb-like DNA-binding domain; similar to CDPK
           substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
           crystallinum].
          Length = 626

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 154 ATALAFFILFCFLRYRRAGWLNQV 83
           A  L FFI FCF  YR +G+L  V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289


>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
           gb|AAF22524.1
          Length = 399

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 311 DLQQFQSFGQILGSILRP 258
           DL+  QS GQI+G +LRP
Sbjct: 52  DLKSLQSVGQIIGEVLRP 69


>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
           p42D, putative similar to 26S proteasome regulatory
           complex subunit p42D [Drosophila melanogaster]
           gi|6434958|gb|AAF08391
          Length = 399

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 311 DLQQFQSFGQILGSILRP 258
           DL+  QS GQI+G +LRP
Sbjct: 52  DLKSLQSVGQIIGEVLRP 69


>At5g12280.1 68418.m01444 hypothetical protein
          Length = 419

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 329 SVESLQINVQRIKEYRARLILFPKGKKVLKGEA 427
           +V+SL  NV  +KE  +  I FP  K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394


>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
            domain-containing protein contains Pfam domain, PF02373:
            jmjC domain
          Length = 1027

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 398  KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVADLSLKMKRTSK 541
            K  + L GE + E  +    +RGP     +   K++ DLS   K++S+
Sbjct: 885  KALRDLSGEKSPEPEEKKQNMRGPKKGAAKAVAKALKDLSPSEKKSSE 932


>At5g02760.1 68418.m00218 protein phosphatase 2C family protein /
           PP2C family protein similar to Ser/Thr protein
           phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
           thaliana]; similar to protein phosphatase 2C
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 370

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 277 WVQSCGPNSRRVNPLPARTLVWYRTVGHRTIG 182
           W    G    ++NP     L WY+ +G  T G
Sbjct: 6   WRIGAGMERSKINPTKVDGLTWYKDLGLHTFG 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,936,803
Number of Sequences: 28952
Number of extensions: 258898
Number of successful extensions: 617
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)