Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30650
         (802 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   1.6  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   2.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.7  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       22   6.5  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   6.5  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   6.5  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   6.5  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 353 PPGSTRARSGTSLYPPSQCL 294
           P G+T  +S TS YPP+  L
Sbjct: 60  PSGNTPNKSSTSPYPPNHPL 79


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 226 IQQTPWSASTRAPPSSIISPVN 161
           I Q PW +    PP   ++P+N
Sbjct: 329 IDQQPWRSYCIQPPCGQLNPIN 350


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 455 IQDKPNREKDLELANT*RCAPALDP 529
           + D P+  + L+ A T RC   LDP
Sbjct: 29  LHDNPSLREGLKGARTFRCVFVLDP 53


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 362 GWRPPGSTRARSGTSLYP 309
           G +PPG+T A   + LYP
Sbjct: 217 GQQPPGNTAAALPSPLYP 234


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 362 GWRPPGSTRARSGTSLYP 309
           G +PPG+T A   + LYP
Sbjct: 219 GQQPPGNTAAALPSPLYP 236


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 107 HGPGLLGRRPHCCCFEGPIHRGNDAR 184
           HGP  L  R   CC+   +  G D R
Sbjct: 603 HGPHRLAARSRRCCYHA-VAPGTDIR 627


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 107 HGPGLLGRRPHCCCFEGPIHRGNDAR 184
           HGP  L  R   CC+   +  G D R
Sbjct: 495 HGPHRLAARSRRCCYHA-VAPGTDIR 519


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 495 RTHSVVHQHSTQP 533
           +THS +HQH   P
Sbjct: 99  QTHSSIHQHHHDP 111


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +1

Query: 322 VPERARVDPGGRQPGVRPLQPEADHRTEH 408
           +P    + PGG  P V P      HR  H
Sbjct: 189 LPPSFGIFPGGAPPLVSPFLAAMAHRPPH 217


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 495 RTHSVVHQHSTQP 533
           +THS +HQH   P
Sbjct: 250 QTHSSIHQHHHDP 262


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 495 RTHSVVHQHSTQP 533
           +THS +HQH   P
Sbjct: 309 QTHSSIHQHHHDP 321


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,100
Number of Sequences: 336
Number of extensions: 3484
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)