Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30650
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 145 6e-36
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 119 6e-28
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 113 3e-26
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 112 5e-26
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 111 1e-25
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 108 1e-24
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 28 1.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.3
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 2.3
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 27 3.1
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 27 4.1
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 26 7.2
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 7.2
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 26 7.2
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom... 26 7.2
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 9.5
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 25 9.5
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 9.5
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 145 bits (352), Expect = 6e-36
Identities = 66/84 (78%), Positives = 75/84 (89%)
Frame = +3
Query: 3 KIRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMML 182
+IRG+INICL GDPGVAKSQLL YI ++APR YTTGRGSSGVGLTAAV++DP T EM+L
Sbjct: 392 RIRGDINICLTGDPGVAKSQLLKYISKVAPRGVYTTGRGSSGVGLTAAVMRDPVTDEMVL 451
Query: 183 EGGALVLADQGVCCIDEFDKMAEN 254
EGGALVLAD G+CCIDEFDKM E+
Sbjct: 452 EGGALVLADNGICCIDEFDKMDES 475
Score = 120 bits (288), Expect = 3e-28
Identities = 61/80 (76%), Positives = 65/80 (81%)
Frame = +2
Query: 257 RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSR 436
RTAIHEVMEQQTISI+KAGI T LNAR SILAAANP YGRYNPK NI LPAALLSR
Sbjct: 477 RTAIHEVMEQQTISISKAGITTTLNARTSILAAANPLYGRYNPKVAPIHNINLPAALLSR 536
Query: 437 FDLLWLIQDKPNREKDLELA 496
FD+L+LI D P+RE D LA
Sbjct: 537 FDILFLILDTPSRETDEHLA 556
Score = 50.0 bits (114), Expect = 4e-07
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +3
Query: 510 VHQHSTQPPSSVRALSMKLVRRYVALTKRKEPAVPRALADYIVSSYVELR----REARNA 677
VH H+ QP L ++R Y++ ++ P VP+ + DY+ +YV+LR R+ N
Sbjct: 562 VHMHNEQPKMDFEPLDPNMIRHYISSARQYRPVVPKDVCDYVTGAYVQLRQNQKRDEANE 621
Query: 678 RDVTFTSAR 704
R T+ R
Sbjct: 622 RQFAHTTPR 630
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 119 bits (286), Expect = 6e-28
Identities = 54/81 (66%), Positives = 66/81 (81%)
Frame = +3
Query: 3 KIRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMML 182
KIRG+IN+ L+GDPG AKSQ L Y+++ A R+ + TG+G+S VGLTA+V KDP T E L
Sbjct: 523 KIRGDINVLLLGDPGTAKSQFLKYVEKTAHRAVFATGQGASAVGLTASVRKDPITNEWTL 582
Query: 183 EGGALVLADQGVCCIDEFDKM 245
EGGALVLAD+GVC IDEFDKM
Sbjct: 583 EGGALVLADKGVCLIDEFDKM 603
Score = 95.9 bits (228), Expect = 6e-21
Identities = 53/111 (47%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Frame = +2
Query: 251 EHRTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALL 430
+ RT+IHE MEQQ+ISI+KAGI+T L AR +I+AAANP GRYN QN++L +L
Sbjct: 606 QDRTSIHEAMEQQSISISKAGIVTTLQARCTIIAAANPIGGRYNTTIPFNQNVELTEPIL 665
Query: 431 SRFDLLWLIQDKPNREKDLELAN-----T*RCAPALDPAAQQRPRAVHEAG 568
SRFD+L +++D N E D +LAN R PA DP + E G
Sbjct: 666 SRFDILQVVKDTVNPEIDEQLANFVVSSHIRSHPAFDPNMDVLKKVPTETG 716
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 113 bits (272), Expect = 3e-26
Identities = 49/83 (59%), Positives = 66/83 (79%)
Frame = +3
Query: 3 KIRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMML 182
++RG+IN+ L+GDPG AKSQ L +++RLAP + YT+G+GSS GLTA++ +D T E L
Sbjct: 361 RLRGDINVLLLGDPGTAKSQFLKFVERLAPIAVYTSGKGSSAAGLTASIQRDSVTREFYL 420
Query: 183 EGGALVLADQGVCCIDEFDKMAE 251
EGGA+VLAD G+ CIDEFDKM +
Sbjct: 421 EGGAMVLADGGIVCIDEFDKMRD 443
Score = 99.1 bits (236), Expect = 6e-22
Identities = 45/82 (54%), Positives = 62/82 (75%)
Frame = +2
Query: 251 EHRTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALL 430
E R AIHE MEQQTISIAKAGI T LN+R S+LAAANP +GRY+ +T +NI + +L
Sbjct: 444 EDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDMKTPGENIDFQSTIL 503
Query: 431 SRFDLLWLIQDKPNREKDLELA 496
SRFD++++++D+ + KD +A
Sbjct: 504 SRFDMIFIVKDEHDETKDRNIA 525
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 112 bits (270), Expect = 5e-26
Identities = 48/85 (56%), Positives = 67/85 (78%)
Frame = +3
Query: 3 KIRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMML 182
+ RG+INI + GDP +KSQ+L Y+ ++APR YT+G+GSS VGLTA + +D T +++L
Sbjct: 534 RYRGDINILMCGDPSTSKSQILKYVHKIAPRGVYTSGKGSSAVGLTAYITRDQDTKQLVL 593
Query: 183 EGGALVLADQGVCCIDEFDKMAENT 257
E GALVL+D G+CCIDEFDKM++ T
Sbjct: 594 ESGALVLSDGGICCIDEFDKMSDAT 618
Score = 100 bits (239), Expect = 3e-22
Identities = 47/81 (58%), Positives = 62/81 (76%)
Frame = +2
Query: 257 RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSR 436
R+ +HEVMEQQT+++AKAGI+T LNAR SILA+ANP +YNP + +NI LP LLSR
Sbjct: 619 RSILHEVMEQQTVTVAKAGIITTLNARTSILASANPIGSKYNPDLPVTKNIDLPPTLLSR 678
Query: 437 FDLLWLIQDKPNREKDLELAN 499
FDL++LI D+ + D +LAN
Sbjct: 679 FDLVYLILDRVDETLDRKLAN 699
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 111 bits (267), Expect = 1e-25
Identities = 54/82 (65%), Positives = 64/82 (78%)
Frame = +3
Query: 6 IRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMMLE 185
IRG+INI ++GDP AKSQLL ++ AP + TTGRGSSGVGLTAAV D TGE LE
Sbjct: 346 IRGDINILMVGDPSTAKSQLLRFVLNTAPLAIATTGRGSSGVGLTAAVTTDKETGERRLE 405
Query: 186 GGALVLADQGVCCIDEFDKMAE 251
GA+VLAD+GV CIDEFDKM++
Sbjct: 406 AGAMVLADRGVVCIDEFDKMSD 427
Score = 99.5 bits (237), Expect = 5e-22
Identities = 47/80 (58%), Positives = 63/80 (78%)
Frame = +2
Query: 257 RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSR 436
R AIHEVMEQQT++IAKAGI T LNAR S++AAANP YG+Y+ ++ QNI LP ++LSR
Sbjct: 430 RVAIHEVMEQQTVTIAKAGIHTSLNARCSVIAAANPIYGQYDIRKDPHQNIALPDSMLSR 489
Query: 437 FDLLWLIQDKPNREKDLELA 496
FDLL+++ D + +KD L+
Sbjct: 490 FDLLFIVTDDIDDKKDRALS 509
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 108 bits (259), Expect = 1e-24
Identities = 46/80 (57%), Positives = 61/80 (76%)
Frame = +3
Query: 6 IRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMMLE 185
+RG++NIC++GDP +KSQ L Y+ PR+ YT+G+ SS GLTAAV+KD TG+ +E
Sbjct: 466 LRGDLNICIVGDPSTSKSQFLKYVCNFLPRAIYTSGKASSAAGLTAAVVKDEETGDFTIE 525
Query: 186 GGALVLADQGVCCIDEFDKM 245
GAL+LAD G+C IDEFDKM
Sbjct: 526 AGALMLADNGICAIDEFDKM 545
Score = 97.5 bits (232), Expect = 2e-21
Identities = 48/80 (60%), Positives = 57/80 (71%)
Frame = +2
Query: 257 RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSR 436
+ AIHE MEQQTISIAKAGI LNAR SILAAANP GRYN K T+ NI + A ++SR
Sbjct: 550 QVAIHEAMEQQTISIAKAGIQATLNARTSILAAANPIGGRYNRKTTLRNNINMSAPIMSR 609
Query: 437 FDLLWLIQDKPNREKDLELA 496
FDL +++ D+ N D LA
Sbjct: 610 FDLFFVVLDECNESVDRHLA 629
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 197 GAGRPGRLLYRRVR-QDGGEHRTAIHE 274
G GRPGR +R+R Q+GGE A E
Sbjct: 165 GGGRPGRCKRKRLRSQEGGEGEEAEEE 191
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.3
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +1
Query: 568 SGATWRSPSARSPPCRARSPTTSSLHTSSYGVKLETHVTSRSRRPGTCSQYCASRPHSQG 747
S ++ S S+ SP + S TTSS +SS + +S S T S +SRP S
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSS 397
Query: 748 S 750
S
Sbjct: 398 S 398
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -3
Query: 203 QHQSTAL*HHFPGEWVLQNSSSEADARGAPARGVLTPGREPVDVVEQLRLRNTR 42
+H S+ L HH P L SSSE + P+ +L + ++ L +NTR
Sbjct: 545 KHTSSLLDHHSP----LATSSSEHEMEATPSPALLKKTNKRRELPSSLTKKNTR 594
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +2
Query: 197 GAGRPGRLLYRRVR--QDGGEHRTAIHE 274
G GRPGR +R+R Q+GGE A E
Sbjct: 165 GGGRPGRCKRKRLRSQQEGGEGEEAEEE 192
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 637 SLHTSSYGVKLETHVTSRSRRPGTCSQYCASRPHSQGSDYQT 762
S +SS+ V ETH + S+RPG + + P + ++ Q+
Sbjct: 78 SSQSSSHPVFEETHWSKHSKRPGKLNVLTPTSPSNVNAEVQS 119
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -1
Query: 526 VECWCTTLCVRQL*VFLAIGFILYEPEQIE 437
+ WC +R+L ++ GF+ PE +E
Sbjct: 85 LSAWCVCSNIRELTIYERKGFLKQSPEAVE 114
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +1
Query: 514 TSTRPSRPAASARCP*SWSGATWRSPSARSPPCRARSPTTSSLHTSSYGVKLETHVTSRS 693
+S+ S ++S+ S S ++ S S+ S + P TSS +S + +S S
Sbjct: 172 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSS 231
Query: 694 RRPGTCSQYCASRPHS 741
RP + S + + S
Sbjct: 232 SRPSSSSSFITTMSSS 247
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 574 ATWRSPSARSPPCRARSPTTSSLHTSSYGVKLETHVTSRSRRPGTCSQYCAS-RPHSQGS 750
AT S ++ S P + S + SS+HTSS ++ +S SR + S S S GS
Sbjct: 500 ATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSRSGSSSSSSSRSGSTSSSGS 559
Query: 751 DY 756
+
Sbjct: 560 SH 561
>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 615 RALADYIVSSYVELRREARNARDVTFTSA 701
RA+ D+I++ ++ L++E + +TFT A
Sbjct: 91 RAIFDFILTGFIYLKKEHIASNSLTFTFA 119
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 155 LQNSSSEADARGAPARGVLTPGREPVDVVEQLRLRNTRI 39
L SE A G A+ T + P+ E LRL TRI
Sbjct: 222 LHEEESEQAAEGDTAKNSGTDAQAPLSDDEWLRLHRTRI 260
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +3
Query: 210 QGVCCIDEFDKMAENTAQPYTKLW 281
QG+ + +FD+++ ++ Q +T LW
Sbjct: 510 QGLYALRDFDQISTSSLQTFTMLW 533
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 622 SPTTSSLHTSSYGVKLETHVTSRSRRPGTCSQYCASRPHSQGSDYQTR*KGGRI*GN 792
+PTT S T + T+V+ R PGT S + P+ + T GG + G+
Sbjct: 689 APTTKSSLTE---LAYNTNVSLPPRSPGTGSLAAGNLPNEKAPSLMTMVNGGPVPGD 742
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,052
Number of Sequences: 5004
Number of extensions: 58327
Number of successful extensions: 210
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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