Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30650
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016427-3|AAB65356.1| 730|Caenorhabditis elegans Yeast mcm (li... 151 7e-37
Z81039-5|CAB02770.1| 812|Caenorhabditis elegans Hypothetical pr... 122 2e-28
AC025716-11|AAK39605.1| 823|Caenorhabditis elegans Yeast mcm (l... 120 2e-27
Z50874-6|CAA90765.1| 759|Caenorhabditis elegans Hypothetical pr... 111 4e-25
Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical p... 111 7e-25
Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical p... 111 7e-25
Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical p... 111 7e-25
AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication l... 111 7e-25
AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical ... 109 2e-24
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 1.7
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 1.7
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 29 2.9
Z46241-3|CAA86317.1| 556|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr... 29 5.1
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n... 29 5.1
Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical pr... 28 6.8
U46669-3|AAA85744.2| 737|Caenorhabditis elegans Regulator of g ... 28 6.8
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 28 6.8
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 28 8.9
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 28 8.9
>AF016427-3|AAB65356.1| 730|Caenorhabditis elegans Yeast mcm
(licensing factor) relatedprotein 7 protein.
Length = 730
Score = 151 bits (365), Expect = 7e-37
Identities = 69/84 (82%), Positives = 77/84 (91%)
Frame = +3
Query: 3 KIRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMML 182
KIRG IN+ +MGDPGVAKSQLL Y++RLAPRSQYTTGRGSSGVGLTAAV+KDP TGEM L
Sbjct: 379 KIRGCINVLMMGDPGVAKSQLLGYVNRLAPRSQYTTGRGSSGVGLTAAVMKDPVTGEMSL 438
Query: 183 EGGALVLADQGVCCIDEFDKMAEN 254
EGGALVLAD G+CCIDEFDKM ++
Sbjct: 439 EGGALVLADGGICCIDEFDKMMDH 462
Score = 132 bits (318), Expect = 4e-31
Identities = 64/80 (80%), Positives = 71/80 (88%)
Frame = +2
Query: 257 RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSR 436
RTAIHEVMEQQTISIAKAGIMT LNAR +I+AAANPAYGRYNP R+IEQN+ LPAALLSR
Sbjct: 464 RTAIHEVMEQQTISIAKAGIMTTLNARTAIIAAANPAYGRYNPNRSIEQNVDLPAALLSR 523
Query: 437 FDLLWLIQDKPNREKDLELA 496
FDL+ L+QDK +RE D LA
Sbjct: 524 FDLILLMQDKADRENDKILA 543
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 510 VHQHSTQPPSSVRAL-SMKLVRRYVALTKRKEPAVPRALADYIVSSYVELRREARNARDV 686
VHQH P + L S++ +R Y++L K P V AL + IV +YVE+RR+AR + D
Sbjct: 549 VHQHGCHPNREKKDLISLETLREYISLCKTYTPTVDPALRERIVEAYVEMRRDARYSSDP 608
Query: 687 TFTSAR 704
TF S R
Sbjct: 609 TFVSPR 614
>Z81039-5|CAB02770.1| 812|Caenorhabditis elegans Hypothetical
protein C25D7.6 protein.
Length = 812
Score = 122 bits (295), Expect = 2e-28
Identities = 57/83 (68%), Positives = 70/83 (84%)
Frame = +3
Query: 3 KIRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMML 182
++RG+IN+ L+GDP VAKSQLL Y+ R+APR+ TTGRGSSGVGLTAAV DP +GE L
Sbjct: 337 RLRGDINVLLIGDPSVAKSQLLRYVLRMAPRAITTTGRGSSGVGLTAAVTTDPDSGERRL 396
Query: 183 EGGALVLADQGVCCIDEFDKMAE 251
E GA+VLAD+GV CIDEFDKM++
Sbjct: 397 EAGAMVLADRGVVCIDEFDKMSD 419
Score = 95.1 bits (226), Expect = 5e-20
Identities = 45/80 (56%), Positives = 62/80 (77%)
Frame = +2
Query: 257 RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSR 436
RTAIHEVMEQ ++I+KAGI LNAR S+LAAANP YGRYNP ++ +NI + +LLSR
Sbjct: 422 RTAIHEVMEQGRVTISKAGIHAKLNARCSVLAAANPVYGRYNPFKSPMENIGMQDSLLSR 481
Query: 437 FDLLWLIQDKPNREKDLELA 496
FDL++++ D+ + +KD +A
Sbjct: 482 FDLIFVLLDEHDADKDANVA 501
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 495 RTHSVVHQHSTQPPS--SVRALSMKLVRRYVALTKRKEPAVPRALADYIVSSYVELR 659
+ S +++ +TQ + L+M +R+Y+ L + +P + +YI Y ++R
Sbjct: 539 KASSSIYEENTQWAGIQDTKILTMDFMRKYIHLARSVQPKLTDEATEYISEVYADIR 595
>AC025716-11|AAK39605.1| 823|Caenorhabditis elegans Yeast mcm
(licensing factor) relatedprotein 4 protein.
Length = 823
Score = 120 bits (288), Expect = 2e-27
Identities = 55/84 (65%), Positives = 68/84 (80%)
Frame = +3
Query: 3 KIRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMML 182
K+R INI L GDPG +KSQ+L Y+ RL PRSQYT+G+GSS VGLTA+V +D T +++L
Sbjct: 458 KLRSEINILLCGDPGTSKSQMLQYVYRLLPRSQYTSGKGSSAVGLTASVSRDADTKQLVL 517
Query: 183 EGGALVLADQGVCCIDEFDKMAEN 254
+ GALVLAD GVCCIDEFDKM E+
Sbjct: 518 QTGALVLADNGVCCIDEFDKMNES 541
Score = 96.3 bits (229), Expect = 2e-20
Identities = 47/81 (58%), Positives = 60/81 (74%)
Frame = +2
Query: 257 RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSR 436
R+ +HEVMEQQT+SIAKAGI+ LNAR S+LAAANP ++N +TI +NI LP LLSR
Sbjct: 543 RSVLHEVMEQQTLSIAKAGIICQLNARASVLAAANPVDSKWNRNKTIVENITLPHTLLSR 602
Query: 437 FDLLWLIQDKPNREKDLELAN 499
FDL++LI D + +D L N
Sbjct: 603 FDLIFLIVDAQDEMQDRRLGN 623
>Z50874-6|CAA90765.1| 759|Caenorhabditis elegans Hypothetical
protein R10E4.4 protein.
Length = 759
Score = 111 bits (268), Expect = 4e-25
Identities = 48/82 (58%), Positives = 67/82 (81%)
Frame = +3
Query: 9 RGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMMLEG 188
RG+IN+ L+GDPG AKSQLL ++++++P YT+G+GSS GLTA+V++DP + ++EG
Sbjct: 371 RGDINVLLLGDPGTAKSQLLKFVEQVSPIGVYTSGKGSSAAGLTASVIRDPQSRSFIMEG 430
Query: 189 GALVLADQGVCCIDEFDKMAEN 254
GA+VLAD GV CIDEFDKM E+
Sbjct: 431 GAMVLADGGVVCIDEFDKMRED 452
Score = 87.8 bits (208), Expect = 8e-18
Identities = 44/82 (53%), Positives = 58/82 (70%)
Frame = +2
Query: 251 EHRTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALL 430
+ R AIHE MEQQTISIAKAGI T LN+R S+LAAAN YGR++ R + NI +L
Sbjct: 452 DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVYGRWDESRG-DDNIDFMPTIL 510
Query: 431 SRFDLLWLIQDKPNREKDLELA 496
SRFD++++++D + KD LA
Sbjct: 511 SRFDMIYIVKDTHDVLKDATLA 532
>Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 111 bits (266), Expect = 7e-25
Identities = 48/80 (60%), Positives = 64/80 (80%)
Frame = +3
Query: 6 IRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMMLE 185
+RG+IN+CL+GDP AKSQ+L ++ +PR+ YT+G+ SS GLTAAV+KD + E ++E
Sbjct: 387 LRGDINVCLVGDPSTAKSQVLKAVEEFSPRAIYTSGKASSAAGLTAAVVKDEESFEFVIE 446
Query: 186 GGALVLADQGVCCIDEFDKM 245
GAL+LAD GVCCIDEFDKM
Sbjct: 447 AGALMLADNGVCCIDEFDKM 466
Score = 91.9 bits (218), Expect = 5e-19
Identities = 43/80 (53%), Positives = 57/80 (71%)
Frame = +2
Query: 257 RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSR 436
+ AIHE MEQQTISI KAG+ LNAR SILAAANP GRY+ R ++ N+Q+ A ++SR
Sbjct: 471 QVAIHEAMEQQTISITKAGVKATLNARASILAAANPVNGRYDRSRPLKYNVQMSAPIMSR 530
Query: 437 FDLLWLIQDKPNREKDLELA 496
FDL +++ D+ N D +A
Sbjct: 531 FDLFFVLVDECNEVTDYAIA 550
>Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 111 bits (266), Expect = 7e-25
Identities = 48/80 (60%), Positives = 64/80 (80%)
Frame = +3
Query: 6 IRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMMLE 185
+RG+IN+CL+GDP AKSQ+L ++ +PR+ YT+G+ SS GLTAAV+KD + E ++E
Sbjct: 387 LRGDINVCLVGDPSTAKSQVLKAVEEFSPRAIYTSGKASSAAGLTAAVVKDEESFEFVIE 446
Query: 186 GGALVLADQGVCCIDEFDKM 245
GAL+LAD GVCCIDEFDKM
Sbjct: 447 AGALMLADNGVCCIDEFDKM 466
Score = 91.9 bits (218), Expect = 5e-19
Identities = 43/80 (53%), Positives = 57/80 (71%)
Frame = +2
Query: 257 RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSR 436
+ AIHE MEQQTISI KAG+ LNAR SILAAANP GRY+ R ++ N+Q+ A ++SR
Sbjct: 471 QVAIHEAMEQQTISITKAGVKATLNARASILAAANPVNGRYDRSRPLKYNVQMSAPIMSR 530
Query: 437 FDLLWLIQDKPNREKDLELA 496
FDL +++ D+ N D +A
Sbjct: 531 FDLFFVLVDECNEVTDYAIA 550
>Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical
protein ZK632.1b protein.
Length = 516
Score = 111 bits (266), Expect = 7e-25
Identities = 48/80 (60%), Positives = 64/80 (80%)
Frame = +3
Query: 6 IRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMMLE 185
+RG+IN+CL+GDP AKSQ+L ++ +PR+ YT+G+ SS GLTAAV+KD + E ++E
Sbjct: 93 LRGDINVCLVGDPSTAKSQVLKAVEEFSPRAIYTSGKASSAAGLTAAVVKDEESFEFVIE 152
Query: 186 GGALVLADQGVCCIDEFDKM 245
GAL+LAD GVCCIDEFDKM
Sbjct: 153 AGALMLADNGVCCIDEFDKM 172
Score = 91.9 bits (218), Expect = 5e-19
Identities = 43/80 (53%), Positives = 57/80 (71%)
Frame = +2
Query: 257 RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSR 436
+ AIHE MEQQTISI KAG+ LNAR SILAAANP GRY+ R ++ N+Q+ A ++SR
Sbjct: 177 QVAIHEAMEQQTISITKAGVKATLNARASILAAANPVNGRYDRSRPLKYNVQMSAPIMSR 236
Query: 437 FDLLWLIQDKPNREKDLELA 496
FDL +++ D+ N D +A
Sbjct: 237 FDLFFVLVDECNEVTDYAIA 256
>AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication
licensing factor MCM2/3/5-type protein protein.
Length = 810
Score = 111 bits (266), Expect = 7e-25
Identities = 48/80 (60%), Positives = 64/80 (80%)
Frame = +3
Query: 6 IRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMMLE 185
+RG+IN+CL+GDP AKSQ+L ++ +PR+ YT+G+ SS GLTAAV+KD + E ++E
Sbjct: 387 LRGDINVCLVGDPSTAKSQVLKAVEEFSPRAIYTSGKASSAAGLTAAVVKDEESFEFVIE 446
Query: 186 GGALVLADQGVCCIDEFDKM 245
GAL+LAD GVCCIDEFDKM
Sbjct: 447 AGALMLADNGVCCIDEFDKM 466
Score = 91.9 bits (218), Expect = 5e-19
Identities = 43/80 (53%), Positives = 57/80 (71%)
Frame = +2
Query: 257 RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSR 436
+ AIHE MEQQTISI KAG+ LNAR SILAAANP GRY+ R ++ N+Q+ A ++SR
Sbjct: 471 QVAIHEAMEQQTISITKAGVKATLNARASILAAANPVNGRYDRSRPLKYNVQMSAPIMSR 530
Query: 437 FDLLWLIQDKPNREKDLELA 496
FDL +++ D+ N D +A
Sbjct: 531 FDLFFVLVDECNEVTDYAIA 550
>AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical
protein Y17G7B.5a protein.
Length = 881
Score = 109 bits (263), Expect = 2e-24
Identities = 51/83 (61%), Positives = 63/83 (75%)
Frame = +3
Query: 3 KIRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMML 182
++RG+IN+ L GDPG AKSQ L Y +APRS TTG+G+S VGLTA V + P T E L
Sbjct: 487 RLRGDINVLLCGDPGTAKSQFLRYAAHIAPRSVLTTGQGASAVGLTAYVQRHPVTREWTL 546
Query: 183 EGGALVLADQGVCCIDEFDKMAE 251
E GA+VLAD+GVC IDEFDKM++
Sbjct: 547 EAGAMVLADKGVCLIDEFDKMSD 569
Score = 94.7 bits (225), Expect = 7e-20
Identities = 44/82 (53%), Positives = 62/82 (75%)
Frame = +2
Query: 251 EHRTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALL 430
+ RT+IHE MEQQ+ISI+KAGI+T L+AR +++AA+NP GRYNP RT +N+ L +L
Sbjct: 570 QDRTSIHEAMEQQSISISKAGIVTSLHARCTVIAASNPIGGRYNPTRTFAENVDLTEPIL 629
Query: 431 SRFDLLWLIQDKPNREKDLELA 496
SRFD+L +I+D + +D LA
Sbjct: 630 SRFDVLCVIRDSVDSVEDERLA 651
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 601 SPPCRARSPTTSSLHTSS--YGVKLETHVTSRSRRPGTCSQYCASRP 735
SP SPT+ S SS Y T+ S S +PGT +QY + P
Sbjct: 1779 SPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSP 1825
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 601 SPPCRARSPTTSSLHTSS--YGVKLETHVTSRSRRPGTCSQYCASRP 735
SP SPT+ S SS Y T+ S S +PGT +QY + P
Sbjct: 1786 SPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSP 1832
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 274 FVYGCAVFSAILSNSSIQQTPWSASTRAPPSSIISP 167
FV A +I SNSS +P+ +S+ APPSS P
Sbjct: 448 FVPATAKEISIPSNSSATSSPFKSSSIAPPSSASKP 483
>Z46241-3|CAA86317.1| 556|Caenorhabditis elegans Hypothetical
protein C38D4.4 protein.
Length = 556
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 517 STRPS--RPAASARCP*SWSGATWRSPSARSPPCRARSPTTSSLHTSSYGVKLETHVTSR 690
S +PS PA+SAR + AT + R PP R P+T++ H+S +H T+R
Sbjct: 130 SPKPSFMYPASSARANPAKPQATGYRNTVRHPPVR---PSTATGHSSFANRSAYSHHTTR 186
Query: 691 SRRPG 705
S G
Sbjct: 187 STTVG 191
>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
protein C01C7.1 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 547 ARCP*SWSGATWRSPSARSPPCRARSPTTSSLH 645
A CP S S +T R A P S TTSS+H
Sbjct: 513 AMCPTSSSPSTSRGSQASPAPSHTSSSTTSSVH 545
>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
non-receptor tyrosinekinase protein.
Length = 1043
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 547 ARCP*SWSGATWRSPSARSPPCRARSPTTSSLH 645
A CP S S +T R A P S TTSS+H
Sbjct: 513 AMCPTSSSPSTSRGSQASPAPSHTSSSTTSSVH 545
>Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical protein
K07G5.1 protein.
Length = 998
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 322 VPERARVDPGGRQPGVRPLQPEADHR 399
+P+R RV PGG P + P +PE R
Sbjct: 938 LPQRNRVGPGGAPPPLLPPKPEPRSR 963
>U46669-3|AAA85744.2| 737|Caenorhabditis elegans Regulator of g
protein signalingprotein 6 protein.
Length = 737
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 564 ASWTARGRCWAAGSSAGAQRYVFASSKSFS 475
AS +A G GS+ +RY+FA+SK +S
Sbjct: 219 ASGSAVGGRGVVGSAGSKRRYIFAASKQYS 248
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +1
Query: 535 PAASARCP*SWSGATWRSPSARSPPCRARSPTTSSLHTSSYGVKLET 675
P S++ P S S ++ SP+ +PP +R PTT+S T+S V+ T
Sbjct: 271 PKTSSQ-PVSSSTSSTSSPAPTNPPTTSR-PTTASQSTASQNVETTT 315
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +2
Query: 77 RQARAQESVHHGPGLLGRRPHCCCFEGPIHRGNDARGRCSGAGRPG 214
RQA A +VH G G G CC GP A G G+PG
Sbjct: 83 RQAYADAAVHGGGG-GGGNCEACCLPGPAGPAG-APGNPGRPGKPG 126
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = +1
Query: 283 ATDHKHCEGGYNDVPERARVD----PGGRQPGVRPLQPEADHR 399
A D GY R RV+ G R PG RPLQ DHR
Sbjct: 59 AEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHR 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,517,645
Number of Sequences: 27780
Number of extensions: 363438
Number of successful extensions: 1370
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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