Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30650
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.6  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   7.6  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -1

Query: 574 RRTSFMDSARTLLGGWVECWCTTLCVRQL*VFLAIGFILYEPEQI 440
           R T    +   ++GG+V CW          ++LA  F+  EP  I
Sbjct: 300 RETKTAGTLAVVVGGFVACWLPFFI-----LYLATPFVPVEPPDI 339


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 569 DQLHGQRADAAGRLGRVLVHNAMCSPALSLSRDWVYPV 456
           DQ+HG R     RL R +V +++ +  ++  R  + PV
Sbjct: 202 DQIHGYRCRTMHRLTRQVVVSSVANVRIADHRGVMPPV 239


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 569 DQLHGQRADAAGRLGRVLVHNAMCSPALSLSRDWVYPV 456
           DQ+HG R     RL R +V +++ +  ++  R  + PV
Sbjct: 202 DQIHGYRCRTMHRLTRQVVVSSVANVRIADHRGVMPPV 239


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 495 RTHSVVHQHSTQPPSSVRALSMKLVRRYVALTKRKEPAVP 614
           +T S+ H H  QPP+   + S  +   Y +  +   P  P
Sbjct: 357 QTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATPCTP 396


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 455 IQDKPNREKDLELANT*RCAPALDP 529
           + D P+  + L  A+T RC   LDP
Sbjct: 33  LHDNPSLREGLAGASTFRCVFVLDP 57


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 583 RSPSARSPPCRARSPTTSSLHTSSYGVK 666
           +SP  RSPP  + S     +H S   V+
Sbjct: 465 KSPVLRSPPAFSHSRCPPEIHKSCICVR 492


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 583 RSPSARSPPCRARSPTTSSLHTSSYGVK 666
           +SP  RSPP  + S     +H S   V+
Sbjct: 465 KSPVLRSPPAFSHSRCPPEIHKSCICVR 492


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 405 TYSCRPRCSRASICSGS 455
           +Y+CR RCS     SGS
Sbjct: 50  SYACRGRCSSYLQVSGS 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,886
Number of Sequences: 438
Number of extensions: 4500
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)