Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30650
(802 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replicati... 135 4e-32
At2g16440.1 68415.m01883 DNA replication licensing factor, putat... 126 2e-29
At1g44900.1 68414.m05144 DNA replication licensing factor, putat... 119 3e-27
At5g44635.1 68418.m05469 minichromosome maintenance family prote... 114 7e-26
At2g07690.1 68415.m00993 minichromosome maintenance family prote... 110 9e-25
At5g46280.1 68418.m05697 DNA replication licensing factor, putat... 109 2e-24
At2g14050.1 68415.m01563 minichromosome maintenance family prote... 96 3e-20
At3g09660.1 68416.m01145 minichromosome maintenance family prote... 95 6e-20
At5g35120.1 68418.m04159 hypothetical protein 30 1.6
At2g32840.2 68415.m04021 proline-rich family protein Common fam... 29 2.7
At2g32840.1 68415.m04020 proline-rich family protein Common fam... 29 2.7
At1g51800.1 68414.m05837 leucine-rich repeat protein kinase, put... 29 2.7
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat... 29 4.7
At5g07700.1 68418.m00883 myb family transcription factor (MYB76)... 28 6.3
At1g80610.1 68414.m09459 expressed protein 28 6.3
At5g07690.1 68418.m00882 myb family transcription factor (MYB29)... 28 8.3
At3g48950.1 68416.m05347 glycoside hydrolase family 28 protein /... 28 8.3
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 28 8.3
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 8.3
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 8.3
>At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replication
licensing factor Mcm7 (MCM7) identical to DNA
replication licensing factor Mcm7 SP|P43299 PROLIFERA
protein {Arabidopsis thaliana}; contains Pfam profile
PF00493: MCM2/3/5 family
Length = 716
Score = 135 bits (326), Expect = 4e-32
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +3
Query: 3 KIRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMML 182
KIRG+++ICLMGDPGVAKSQLL +I +APR YTTG+GSSGVGLTAAV++D T EM+L
Sbjct: 365 KIRGDVHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVMRDQVTNEMVL 424
Query: 183 EGGALVLADQGVCCIDEFDKMAEN 254
EGGALVLAD G+C IDEFDKM E+
Sbjct: 425 EGGALVLADMGICAIDEFDKMDES 448
Score = 121 bits (291), Expect = 6e-28
Identities = 58/80 (72%), Positives = 68/80 (85%)
Frame = +2
Query: 257 RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSR 436
RTAIHEVMEQQT+SIAKAGI T LNAR ++LAAANPA+GRY+ +RT +NI LP ALLSR
Sbjct: 450 RTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSR 509
Query: 437 FDLLWLIQDKPNREKDLELA 496
FDLLWLI D+ + + DLELA
Sbjct: 510 FDLLWLILDRADMDSDLELA 529
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 510 VHQHSTQPPSSVRALSMKLVRRYVALTKRKEPAVPRALADYIVSSYVELRR-EARNARDV 686
VHQ P L ++R Y++ +R P VP L +YI ++Y +R+ EA++
Sbjct: 535 VHQTEESPALGFEPLEPNILRAYISAARRLSPYVPAELEEYIATAYSSIRQEEAKSNTPH 594
Query: 687 TFTSAR 704
++T+ R
Sbjct: 595 SYTTVR 600
>At2g16440.1 68415.m01883 DNA replication licensing factor, putative
similar to SP|P49717 DNA replication licensing factor
MCM4 (CDC21 homolog) {Mus musculus}, SP|P29458 Cdc21
protein {Schizosaccharomyces pombe}; contains Pfam
profile PF00493: MCM2/3/5 family
Length = 847
Score = 126 bits (304), Expect = 2e-29
Identities = 57/82 (69%), Positives = 70/82 (85%)
Frame = +3
Query: 9 RGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMMLEG 188
RG+INI L+GDPG +KSQLL YI +L+PR YT+GRGSS VGLTA V KDP TGE +LE
Sbjct: 476 RGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLES 535
Query: 189 GALVLADQGVCCIDEFDKMAEN 254
GALVL+D+G+CCIDEFDKM+++
Sbjct: 536 GALVLSDRGICCIDEFDKMSDS 557
Score = 106 bits (255), Expect = 1e-23
Identities = 49/80 (61%), Positives = 63/80 (78%)
Frame = +2
Query: 257 RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSR 436
R+ +HEVMEQQT+SIAKAGI+ LNAR S+LA ANP+ RYNP+ ++ +NI LP LLSR
Sbjct: 559 RSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSR 618
Query: 437 FDLLWLIQDKPNREKDLELA 496
FDL++LI DKP+ + D LA
Sbjct: 619 FDLIYLILDKPDEQTDRRLA 638
>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
similar to DNA replication licensing factor MCM2 from
{Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 928
Score = 119 bits (286), Expect = 3e-27
Identities = 53/81 (65%), Positives = 66/81 (81%)
Frame = +3
Query: 3 KIRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMML 182
++RG+IN+ L+GDPG AKSQ L Y+++ R+ YTTG+G+S VGLTAAV KDP T E L
Sbjct: 530 RLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTL 589
Query: 183 EGGALVLADQGVCCIDEFDKM 245
EGGALVLAD+G+C IDEFDKM
Sbjct: 590 EGGALVLADRGICLIDEFDKM 610
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/82 (50%), Positives = 59/82 (71%)
Frame = +2
Query: 251 EHRTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALL 430
+ R +IHE MEQQ+ISI+KAGI+T L AR S++AAANP GRY+ ++ QN++L +L
Sbjct: 613 QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKSFAQNVELTDPIL 672
Query: 431 SRFDLLWLIQDKPNREKDLELA 496
SRFD+L +++D + D LA
Sbjct: 673 SRFDILCVVKDVVDPVTDEMLA 694
>At5g44635.1 68418.m05469 minichromosome maintenance family protein
/ MCM family protein similar to SP|P97311 DNA
replication licensing factor MCM6 {Mus musculus};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 831
Score = 114 bits (274), Expect = 7e-26
Identities = 49/80 (61%), Positives = 61/80 (76%)
Frame = +3
Query: 6 IRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMMLE 185
+RG+IN+C++GDP AKSQ L Y + PRS YT+G+ SS GLTA V K+P TGE +E
Sbjct: 385 LRGDINVCIVGDPSCAKSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIE 444
Query: 186 GGALVLADQGVCCIDEFDKM 245
GAL+LAD G+CCIDEFDKM
Sbjct: 445 AGALMLADNGICCIDEFDKM 464
Score = 96.3 bits (229), Expect = 2e-20
Identities = 45/81 (55%), Positives = 59/81 (72%)
Frame = +2
Query: 257 RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSR 436
+ AIHE MEQQTISI KAGI LNAR SILAAANP GRY+ + ++ N+ LP A+LSR
Sbjct: 469 QVAIHEAMEQQTISITKAGIQATLNARTSILAAANPVGGRYDKSKPLKYNVNLPPAILSR 528
Query: 437 FDLLWLIQDKPNREKDLELAN 499
FDL++++ D P+ D +A+
Sbjct: 529 FDLVYVMIDDPDEVTDYHIAH 549
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 501 HSVVHQHSTQPPSSVRALSMKLVRRYVALTKRKEPAVPRALADYIVSSYVELRR 662
H +V H + + ++RY+A K +P + +V SYV LRR
Sbjct: 549 HHIVRVHQKHEAALSPEFTTVQLKRYIAYAKTLKPKLSPEARKLLVESYVALRR 602
>At2g07690.1 68415.m00993 minichromosome maintenance family protein
/ MCM family protein similar to SP|P55862 DNA
replication licensing factor MCM5 (CDC46 homolog)
{Xenopus laevis}; contains Pfam profile PF00493:
MCM2/3/5 family
Length = 727
Score = 110 bits (265), Expect = 9e-25
Identities = 49/81 (60%), Positives = 64/81 (79%)
Frame = +3
Query: 3 KIRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMML 182
K+RG+IN+ L+GDP AKSQ L ++++ AP + YT+G+GSS GLTA+V++D T E L
Sbjct: 364 KLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDSSTREFYL 423
Query: 183 EGGALVLADQGVCCIDEFDKM 245
EGGA+VLAD GV CIDEFDKM
Sbjct: 424 EGGAMVLADGGVVCIDEFDKM 444
Score = 98.7 bits (235), Expect = 4e-21
Identities = 47/83 (56%), Positives = 61/83 (73%)
Frame = +2
Query: 251 EHRTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALL 430
E R AIHE MEQQTISIAKAGI T LN+R S+LAAANP GRY+ +T + NI L +L
Sbjct: 447 EDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTIL 506
Query: 431 SRFDLLWLIQDKPNREKDLELAN 499
SRFDL+++++D +D E+A+
Sbjct: 507 SRFDLIFIVKDIRKYSQDKEIAS 529
>At5g46280.1 68418.m05697 DNA replication licensing factor, putative
similar to SP|Q43704 DNA replication licensing factor
MCM3 homolog (Replication origin activator) (ROA
protein) {Zea mays}; contains Pfam profile PF00493:
MCM2/3/5 family
Length = 776
Score = 109 bits (263), Expect = 2e-24
Identities = 53/80 (66%), Positives = 63/80 (78%)
Frame = +3
Query: 6 IRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMMLE 185
+RG+IN+ ++GDP VAKSQLL I +AP + TTGRGSSGVGLTAAV D TGE LE
Sbjct: 325 LRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLE 384
Query: 186 GGALVLADQGVCCIDEFDKM 245
GA+VLAD+G+ CIDEFDKM
Sbjct: 385 AGAMVLADKGIVCIDEFDKM 404
Score = 91.9 bits (218), Expect = 5e-19
Identities = 44/72 (61%), Positives = 56/72 (77%)
Frame = +2
Query: 251 EHRTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALL 430
+ R AIHEVMEQQT++IAKAGI LNAR S++AAANP YG Y+ T +NI LP +LL
Sbjct: 407 QDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLL 466
Query: 431 SRFDLLWLIQDK 466
SRFDLL+++ D+
Sbjct: 467 SRFDLLFIVLDQ 478
>At2g14050.1 68415.m01563 minichromosome maintenance family protein
/ MCM family protein low similarity to SP|P49736 DNA
replication licensing factor MCM2 {Homo sapiens};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 653
Score = 95.9 bits (228), Expect = 3e-20
Identities = 46/84 (54%), Positives = 58/84 (69%)
Frame = +3
Query: 3 KIRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMML 182
K+RG ++ L+GDPG KSQ L + +L+ R+ TTG GS+ GLT +KD GE ML
Sbjct: 347 KVRGESHLLLIGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVTAVKD--GGEWML 404
Query: 183 EGGALVLADQGVCCIDEFDKMAEN 254
E GALVLAD G+CCIDEFD M E+
Sbjct: 405 EAGALVLADGGLCCIDEFDSMREH 428
Score = 52.8 bits (121), Expect = 3e-07
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +2
Query: 251 EH-RTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAAL 427
EH R IHE MEQQ+IS+AKAG++T L+ + + A NP G+Y+P + +N + A +
Sbjct: 427 EHDRATIHEAMEQQSISVAKAGLVTTLSTKTIVFGATNPK-GQYDPDQ-YTKNPEWDAVV 484
Query: 428 LSRFDLLWLIQDKPNREKD 484
S +L +Q + +RE D
Sbjct: 485 SSH--ILAEVQIEQDREVD 501
>At3g09660.1 68416.m01145 minichromosome maintenance family protein
/ MCM family protein similar to SP|P49717 DNA
replication licensing factor MCM4 (CDC21 homolog) {Mus
musculus}; contains Pfam profile PF00493: MCM2/3/5
family
Length = 777
Score = 94.7 bits (225), Expect = 6e-20
Identities = 41/80 (51%), Positives = 56/80 (70%)
Frame = +3
Query: 6 IRGNINICLMGDPGVAKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMMLE 185
+RG+I++ ++GDPG+ KSQLL ++PR Y G ++ GLT AV+KD T + E
Sbjct: 393 VRGDIHVIIVGDPGLGKSQLLQAAAAISPRGIYVCGNATTRAGLTVAVVKDSMTNDYAFE 452
Query: 186 GGALVLADQGVCCIDEFDKM 245
GA+VLAD G+CCIDEFDKM
Sbjct: 453 AGAMVLADGGLCCIDEFDKM 472
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/82 (48%), Positives = 63/82 (76%)
Frame = +2
Query: 251 EHRTAIHEVMEQQTISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALL 430
EH+ A+ E MEQQ +S+AKAG++ L+AR S++AAANP G YN +T+ +N+++ AALL
Sbjct: 475 EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVIAAANPVGGHYNRAKTVNENLKMSAALL 533
Query: 431 SRFDLLWLIQDKPNREKDLELA 496
SRFDL++++ DKP+ D +++
Sbjct: 534 SRFDLVFILLDKPDELLDKQVS 555
>At5g35120.1 68418.m04159 hypothetical protein
Length = 107
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 6 IRGNINICLMGDPGV--AKSQLLNYIDRLAPRSQYTTGRGSSGVGLTAAVL 152
I GNIN+C +G+ + S + +Y++ L R +Y G S L V+
Sbjct: 38 IEGNINVCQLGEKDLKDLSSVIDDYLNSLKSRVEYLKKNGESSSSLPPRVV 88
>At2g32840.2 68415.m04021 proline-rich family protein Common family
member: At1g04930 [Arabidopsis thaliana]
Length = 291
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = -3
Query: 173 FPGEWVLQNSSSEADARGAPARGVLTPGREPV 78
FP V QNS+S AD G+P+ G TP R PV
Sbjct: 108 FPTRPVRQNSNSVADPVGSPSPGGYTP-RGPV 138
>At2g32840.1 68415.m04020 proline-rich family protein Common family
member: At1g04930 [Arabidopsis thaliana]
Length = 337
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = -3
Query: 173 FPGEWVLQNSSSEADARGAPARGVLTPGREPV 78
FP V QNS+S AD G+P+ G TP R PV
Sbjct: 108 FPTRPVRQNSNSVADPVGSPSPGGYTP-RGPV 138
>At1g51800.1 68414.m05837 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 894
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 42 PGVAKSQLLNYID--RLAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMMLEGGAL 197
P +AK++ L YID ++ + GRG GV + +P +M+ E AL
Sbjct: 568 PVIAKNRKLTYIDVVKITNNFERVLGRGGFGVVYYGVLNNEPVAVKMLTESTAL 621
>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
similar to CLIP-associating protein CLASP2 (GI:13508651)
[Rattus norvegicus]
Length = 1439
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 589 PSARSPPCRARSPTTSSLHTSSYGVKLETHVTSRSRRPG 705
PS+R PP A +P ++S HTSS + + S R G
Sbjct: 621 PSSRDPPFHAVAPASNS-HTSSAAAESTHSINKGSNRNG 658
>At5g07700.1 68418.m00883 myb family transcription factor (MYB76)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 338
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 292 HKHCEGGYNDVPERARVDPGGRQPGVR 372
H H EGG+ D+PE+A + G+ +R
Sbjct: 30 HDHGEGGWRDIPEKAGLKRCGKSCRLR 56
>At1g80610.1 68414.m09459 expressed protein
Length = 211
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +1
Query: 517 STRPSRPAASARCP*SWSGATWRSPSARSPPCRARSPTTSSLHTSSYGVK 666
S + + AS P SWSGAT S S A + T L SS VK
Sbjct: 49 SKKGDQTRASPTTPLSWSGATSLSGGGGSGGSGAGATTMEGLEESSAAVK 98
>At5g07690.1 68418.m00882 myb family transcription factor (MYB29)
similar to myb transcription factor GI:3941436 from
[Arabidopsis thaliana]
Length = 336
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 292 HKHCEGGYNDVPERARVDPGGRQPGVR 372
H+H EGG+ D+P++A + G+ +R
Sbjct: 30 HEHGEGGWRDIPQKAGLKRCGKSCRLR 56
>At3g48950.1 68416.m05347 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
(Pectinase) {Agrobacterium tumefaciens}; contains
PF00295: Glycosyl hydrolases family 28
Length = 469
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +3
Query: 84 LAPRSQYTTGRGSSGVGLTAAVLKDPFTGEMMLEGGALVLADQGVCCIDEFDKMAENTAQ 263
+AP Y GR +G G +++ ++++ G + QG D+F K +
Sbjct: 122 IAPLPSYGKGRDGTGTGRFNSLISGTNLTDVVITGNNGTINGQGQYWWDKFKKKQFKITR 181
Query: 264 PY 269
PY
Sbjct: 182 PY 183
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = -1
Query: 772 LFNASDNLSLASAVERRSIASKFLADVNVTSRAFLASRRSSTYEETM*SASARGTAGSLR 593
L N N+ +S+ S A+ + N+TS A +ASR ++ T+ RG S
Sbjct: 703 LNNEPTNVQSSSSSSEVSNATTGARNTNITSFASVASRTTTPMAPTVKEPGKRGKKQSRV 762
Query: 592 LVSAT 578
L+S T
Sbjct: 763 LLSTT 767
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +1
Query: 466 TQSRERLRAGEHIALCTSTRPSRPAASARCP*SWSGATWRSPSARSPPCRARSPTTS 636
++SR R R+ S+R S +++R P S + RSPS R R+RSP S
Sbjct: 223 SRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKS--RSPSPRRSRSRSRSPLPS 277
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +1
Query: 466 TQSRERLRAGEHIALCTSTRPSRPAASARCP*SWSGATWRSPSARSPPCRARSPTTS 636
++SR R R+ S+R S +++R P S + RSPS R R+RSP S
Sbjct: 223 SRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKS--RSPSPRRSRSRSRSPLPS 277
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,661,401
Number of Sequences: 28952
Number of extensions: 338519
Number of successful extensions: 1287
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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