Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30649X
         (474 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    26   0.20 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   2.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   2.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.3  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   5.8  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 270 QYCDWCFTASCSDMASTCI 214
           +Y DWC T  C + A TC+
Sbjct: 98  EYVDWCSTNPCENQA-TCV 115


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +1

Query: 52  NHHDGRVFLWCHPFIIT--SVRDMGSRG 129
           NH  GR+   CH  + T   ++D  +RG
Sbjct: 276 NHQRGRILGGCHILVATPGRLKDFVNRG 303


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 116 WDPEAKAEYPRSNKLVI 166
           W P  KAE P SN + I
Sbjct: 95  WVPGGKAEVPPSNPIYI 111


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +3

Query: 93  HHHISQRHGIQRQKQNTHAATSSSFVKH 176
           HHH       Q    N H A + S   H
Sbjct: 323 HHHAGHHIHAQHHVVNHHVAANGSLKHH 350


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 10  SHVNVLLKISIN**NHHDGRVFLWCHPFIITSVRDMGSR 126
           S V+VLL+ ++    +   RV  W  P  +  + D G R
Sbjct: 68  SSVDVLLQEAVFEGTNRKNRVLQWREPEELRRLMDFGVR 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,129
Number of Sequences: 336
Number of extensions: 2134
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)