Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30649X
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   2.5  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   2.5  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   3.4  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   3.4  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   4.5  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    25   4.5  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    25   4.5  
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    25   7.8  

>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 265 VLKVGESRHVRLDIEFPDAPVTFTLVQGSGQ 357
           V+ +    HVR++  F +  ++  LV+G+G+
Sbjct: 578 VMTMAREHHVRIEANFANTVLSILLVEGAGR 608


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 89  LSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 235
           L +S ++  +  +  AE     KL+  Q L+G DAK D L ++ V A S
Sbjct: 536 LYTSSENWVYSEQQLAEVRNMEKLLDAQ-LMGGDAKVDRLRLLMVFASS 583


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 309 IPRCACYIYSCSGFGAVHLIGHISLVLCL 395
           IP+   YI+  S  G ++L+ ++ LVL L
Sbjct: 77  IPKFLDYIFPTSSMGPLNLVSNLGLVLFL 105


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 94  IITSVRDMGSRGKSRIPTQQQARHSSSIVRSRCQTR*IKCDTG 222
           +   V+D+  + K R+P +Q+ R   +     C+ + IKC+ G
Sbjct: 12  LFADVKDLERKKKRRVPPEQRRRVFRAC--KHCRQKKIKCNGG 52


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 115 MGSRGKSRIPTQQQARHSS-SIVRSRCQTR*IKCDTGGSHVTTRSSKTPV 261
           + S  + R P+   +  S+ S ++SR   R  K    GSH   RSSK P+
Sbjct: 111 VASSSRHRSPSHNDSSPSTQSSLKSRGSIRRYKSVREGSHRPGRSSKEPL 160


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 160 ELVAAWVFCFCLWIP 116
           +L + W+FCFC  +P
Sbjct: 170 DLQSQWIFCFCYKLP 184


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 160 ELVAAWVFCFCLWIP 116
           +L + W+FCFC  +P
Sbjct: 170 DLQSQWIFCFCYKLP 184


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 271 SILRLVFYCFL**HGFHLY-HI*FI 200
           S+L L  YC L   GFHL  H+ F+
Sbjct: 218 SLLNLTIYCILCYPGFHLISHLNFV 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,932
Number of Sequences: 5004
Number of extensions: 33416
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)