Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30649X
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187...    29   2.5  
05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355...    28   4.4  

>04_01_0168 -
           1874297-1874645,1874968-1875137,1875688-1875807,
           1876750-1876812
          Length = 233

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 347 P*TRVNVTGASGNSMSRRTCLDSPTFNTATG 255
           P T  + T A   S S + C DSPT +T++G
Sbjct: 4   PTTSYSTTSAMERSNSTKRCSDSPTVSTSSG 34


>05_01_0445 +
           3547176-3547577,3548625-3549557,3550246-3550524,
           3550624-3550752,3550813-3550869
          Length = 599

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
 Frame = +2

Query: 152 NKLVI---RQALLGPDAKPDELNVIQVEAMSLQEAVKHQ-SQY*KLVNQGMYVWTLNSQM 319
           NKL+I   ++ LL      DEL+ I V+ +S+Q   K + S   KLV  G     +N  +
Sbjct: 284 NKLLIDSYKEQLLQALKDDDELSQI-VQDISIQGRYKSRFSTMKKLVKDGRKPEEVNDIL 342

Query: 320 RLLHLLLFRVRGSTLNW 370
            L  +L  R  GS+L+W
Sbjct: 343 ALRVILEPRCDGSSLDW 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,698,780
Number of Sequences: 37544
Number of extensions: 231806
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)