Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30649X
(474 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10) 33 0.16
SB_51946| Best HMM Match : PhyH (HMM E-Value=0.0025) 31 0.49
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023) 31 0.65
SB_51039| Best HMM Match : OAR (HMM E-Value=0.92) 29 2.0
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 28 4.5
SB_53232| Best HMM Match : OAR (HMM E-Value=0.92) 28 4.5
SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 28 4.5
SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 28 4.5
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 28 4.5
SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40) 28 4.5
SB_24440| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_42814| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.4e-09) 27 7.9
>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
Length = 282
Score = 32.7 bits (71), Expect = 0.16
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +2
Query: 68 EFFYGVTLSSSHQSETWDPEAKAEYPR----SNKLVIRQALLGPDAKPDELNVIQVEAMS 235
E F+G LS S + TW+PE E +KLV+ QA LG +K ++++V +M
Sbjct: 7 EDFWGCVLSKSEDTVTWNPEFDGEDTLLGQIEHKLVLSQACLG--SKATGKSMVEVTSMD 64
Query: 236 LQ 241
+
Sbjct: 65 FK 66
>SB_51946| Best HMM Match : PhyH (HMM E-Value=0.0025)
Length = 230
Score = 31.1 bits (67), Expect = 0.49
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 261 DWCFTASCS-DMASTCITFNSSGLASGPNNA*RMTSLLLRG 142
DW F + D+ CI+ + + + +GP + R TS L+RG
Sbjct: 151 DWAFNPHTNQDLVMICISIDDTNIENGPVDWDRFTSTLVRG 191
>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
Length = 873
Score = 30.7 bits (66), Expect = 0.65
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 152 NKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKH 256
NKLV+ Q LLG AK + + +++ E L+ + H
Sbjct: 304 NKLVLEQQLLGLSAKEERIEILEEENKKLKGHIHH 338
>SB_51039| Best HMM Match : OAR (HMM E-Value=0.92)
Length = 545
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 125 EAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKH 256
EA PR+ K++ RQ ++ + E N ++ A + E +KH
Sbjct: 137 EALINSPRTRKILSRQGVVKTPEEEKESNTLKALASDISEGLKH 180
>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 214 DTGGSHVTTRSSKTPVAVLKVGESRHVRL---DIEFPDAPVTFTLVQGS 351
+T HVT RSS +P ++ R +RL D E D + TL + S
Sbjct: 535 ETSTDHVTRRSSASPEKIVSKTRDRKIRLVIIDYESTDVDLQATLKRSS 583
>SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
Length = 929
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Frame = +2
Query: 122 PEAKAEY-------PRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKH 256
PE KAE PR+ K++ RQ ++ + E N ++ A + E +KH
Sbjct: 140 PEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTLKALASDISEGLKH 191
>SB_53232| Best HMM Match : OAR (HMM E-Value=0.92)
Length = 806
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Frame = +2
Query: 122 PEAKAEY-------PRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKH 256
PE KAE PR+ K++ RQ ++ + E N ++ A + E +KH
Sbjct: 162 PEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTLKALASDISEGLKH 213
>SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
Length = 838
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Frame = +2
Query: 122 PEAKAEY-------PRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKH 256
PE KAE PR+ K++ RQ ++ + E N ++ A + E +KH
Sbjct: 140 PEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTLKALASDISEGLKH 191
>SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
Length = 929
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Frame = +2
Query: 122 PEAKAEY-------PRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKH 256
PE KAE PR+ K++ RQ ++ + E N ++ A + E +KH
Sbjct: 140 PEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTLKALASDISEGLKH 191
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 72 FSMVSPFHHHISQRHGIQRQKQNTHAATSSSFVK 173
FS+ P I+ RHG+ RQK HA+ SF K
Sbjct: 338 FSLHRPVED-INYRHGLGRQKLLFHASRGKSFYK 370
>SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)
Length = 956
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Frame = +2
Query: 122 PEAKAEY-------PRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKH 256
PE KAE PR+ K++ RQ ++ + E N ++ A + E +KH
Sbjct: 826 PEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTLKALASDISEGLKH 877
>SB_24440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 111 RHGIQRQKQNTHAATSSSFVKHC 179
+ G+ RQ +NT+ AT SS VK C
Sbjct: 389 KSGLARQLRNTNDATESSEVKTC 411
>SB_42814| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.4e-09)
Length = 924
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 282 FTNFQ-YCDWCFTASCSDMASTCITFNSSGLAS 187
FT Q +CDW F S +D TC+ N G S
Sbjct: 211 FTTVQAFCDWLFDGSNADY--TCLAHNFKGYDS 241
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,515,491
Number of Sequences: 59808
Number of extensions: 259387
Number of successful extensions: 627
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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