Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30649X
(474 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 30 0.98
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 27 5.2
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 27 5.2
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a... 27 5.2
Z82266-6|CAB05176.1| 393|Caenorhabditis elegans Hypothetical pr... 27 6.9
U50312-10|AAY86208.1| 356|Caenorhabditis elegans Hypothetical p... 27 6.9
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 27 6.9
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 27 6.9
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 27 6.9
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 29.9 bits (64), Expect = 0.98
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 119 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 241
+ EA A R+ K + ALL PDA PD N ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 48 VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 164
V SS +T + S FHHH SQ G R +N A T+++
Sbjct: 700 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 48 VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 164
V SS +T + S FHHH SQ G R +N A T+++
Sbjct: 578 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615
>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
assigned gene nameprotein 80 protein.
Length = 4900
Score = 27.5 bits (58), Expect = 5.2
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 92 SSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSL-QEAVKHQSQY 268
S +H+ E +KA+Y RS + P +P E V++ + L QE + H ++
Sbjct: 229 SDNHEKERSSATSKADYERSFDQDVTYERSSPLLEPSEEPVMESKEPELTQEEIDHIARI 288
Query: 269 *KLVNQGMY 295
L Q +
Sbjct: 289 QSLAEQSSF 297
>Z82266-6|CAB05176.1| 393|Caenorhabditis elegans Hypothetical
protein F23B2.10 protein.
Length = 393
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = -1
Query: 336 SKCNRRIWEFNVQTYMP*FTNFQYCDWCFTASCSDMASTCITFNSSGLASGPNNA*RMTS 157
SKC + I++ N + C+ CF SD+ S C +S G+ +A M
Sbjct: 10 SKCEK-IYDDNKRKICSGKCGHSICESCFDRKSSDICSICNQIDSFGVKCINRSAMEMVE 68
Query: 156 LLLRGYS 136
+ +S
Sbjct: 69 MKKNAFS 75
>U50312-10|AAY86208.1| 356|Caenorhabditis elegans Hypothetical
protein B0222.11 protein.
Length = 356
Score = 27.1 bits (57), Expect = 6.9
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = -1
Query: 390 RAPRRCVQLSVLPRTLNK-SKCNRR-IWEFNVQTYMP*FTNFQYCDWCFTASCSDMAS 223
R P C V P L S C+ +W TY P + N CD+ T+ S AS
Sbjct: 226 RFPISCTTRGVTPDGLGTVSLCSTCWVWRRLPSTYYPAYLNEVVCDYADTSCLSGYAS 283
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 214 DTGGSHVTTRSSKTPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGS 351
D G+++ +S+TP L + ES +V I PD T GS
Sbjct: 2773 DNQGNYILVLTSETPTKTLPIDESGNVVYPITKPDGTPLATDSTGS 2818
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 214 DTGGSHVTTRSSKTPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGS 351
D G+++ +S+TP L + ES +V I PD T GS
Sbjct: 2818 DNQGNYILVLTSETPTKTLPIDESGNVVYPITKPDGTPLATDSTGS 2863
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 214 DTGGSHVTTRSSKTPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGS 351
D G+++ +S+TP L + ES +V I PD T GS
Sbjct: 2818 DNQGNYILVLTSETPTKTLPIDESGNVVYPITKPDGTPLATDSTGS 2863
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,889,018
Number of Sequences: 27780
Number of extensions: 198602
Number of successful extensions: 476
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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