Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30649X
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   2.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   2.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.9  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 342 SGFGAVHLIGHISLVLC 392
           +G GAVHL+G  S + C
Sbjct: 182 AGSGAVHLVGGSSALAC 198


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 59  MTDEFFYGVTLSSSHQSETW 118
           M+DE  YG+ + S  Q+ +W
Sbjct: 209 MSDELGYGLIVYSWEQNRSW 228


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 56  IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLV 163
           + TD      ++SSS +++ W P+   E    N L+
Sbjct: 367 LRTDISSSSSSISSSEENDFWQPKPTLEDAPQNSLL 402


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 52  NHHDGRVFLWCHPFIITS 105
           +H+DGR+  W  P ++ S
Sbjct: 274 DHNDGRLRYWRTPSVVVS 291


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 160 RHSSSIVRSRCQTR*IKCDTGG 225
           +H SS   + C    ++C TGG
Sbjct: 282 QHRSSSASTTCSGHTVRCFTGG 303


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 207 NSSGLASGPNNA*RMTSLLLRGYSAFASGS 118
           N  G  + PN+A R     + G  A  SGS
Sbjct: 576 NDEGGKTSPNSAVRKCMSPINGSGASGSGS 605


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = +3

Query: 75  SMVSPFHHHISQRHGIQRQKQNTHAATSSSF 167
           +M  P HHH  Q   +Q          S S+
Sbjct: 346 TMGPPHHHHHHQTQSLQHLHYRQPPTLSESY 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,089
Number of Sequences: 438
Number of extensions: 2316
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)