Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30649X
         (474 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16240.1 68414.m01945 syntaxin 51 (SYP51) identical to SP|Q9S...    30   0.70 
At2g03220.1 68415.m00275 galactoside 2-alpha-L-fucosyltransferas...    29   1.6  
At3g58050.1 68416.m06471 expressed protein                             28   2.8  
At4g21510.1 68417.m03109 F-box family protein contains Pfam PF00...    27   6.5  
At4g01180.1 68417.m00156 XH/XS domain-containing protein contain...    27   8.6  

>At1g16240.1 68414.m01945 syntaxin 51 (SYP51) identical to SP|Q9SA23
           Syntaxin 51 (AtSYP51) {Arabidopsis thaliana}; supporting
           cDNA gi|13811643|gb|AF355755.1|AF355755
          Length = 232

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 167 RQALLGPDAKPDELNVIQVEAMSLQEAVKHQSQY*KLVNQGM 292
           R +LLGPD KPD+ ++ +V  M  Q  V +Q Q  +  ++G+
Sbjct: 106 RDSLLGPDIKPDD-SMSRVTGMDNQGIVGYQRQVMREQDEGL 146


>At2g03220.1 68415.m00275 galactoside 2-alpha-L-fucosyltransferase /
           xyloglucan alpha-(1,2)-fucosyltransferase (FUT1) (FT1)
           identical to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 558

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/61 (29%), Positives = 23/61 (37%)
 Frame = -2

Query: 362 VYCPEP*TRVNVTGASGNSMSRRTCLDSPTFNTATGXXXXXXVTWLPPVSHLIHLVWHLD 183
           +Y PE   R     + G +MS   C  SP F            T +P V H   + W L 
Sbjct: 499 LYRPE--NRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDISWGLK 556

Query: 182 L 180
           L
Sbjct: 557 L 557


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 86  TLSSSHQSETWDPEAKAEYPRSN 154
           T  S H  + W+P    +YPRSN
Sbjct: 834 TRDSLHSKQVWEPMEPKKYPRSN 856


>At4g21510.1 68417.m03109 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 225

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 238 TRSSKTPVAVLKVGESRHVRLDIEFPDAP 324
           TR+ +  + + +V +SRH   DIE P+AP
Sbjct: 174 TRAFRNSIDLEEVSDSRHQEDDIEPPNAP 202


>At4g01180.1 68417.m00156 XH/XS domain-containing protein contains
           Pfam domain PF03469: XH domain and PF03468: XS domain
          Length = 554

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +2

Query: 203 ELNVIQVEAMSLQEAVKHQSQY*KLVNQGMYVWTLNSQMRLLHLLLFRVRGSTLNWTHLL 382
           E N    EAM L E  KHQ +  KL  + M +    ++ + L L + +++G+T    H++
Sbjct: 283 EQNEANEEAMKLAE--KHQKEKEKLHKRIMEMEAKLNETQELELEIEKLKGTTNVMKHMV 340

Query: 383 G 385
           G
Sbjct: 341 G 341


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,308,325
Number of Sequences: 28952
Number of extensions: 183187
Number of successful extensions: 453
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)