Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30648
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    93   5e-20
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    28   1.2  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    27   2.0  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   4.7  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    26   6.1  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.1  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   8.1  

>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 92.7 bits (220), Expect = 5e-20
 Identities = 38/66 (57%), Positives = 50/66 (75%)
 Frame = +2

Query: 515 EEFRPFIRRLPEFKFWLSVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQI 694
           +EFRPFIRRLPEFKFW S  ++TL A   +F   F++PVFWPILV+Y++ L     +RQI
Sbjct: 104 DEFRPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPVFWPILVVYYLVLSFFCFRRQI 163

Query: 695 KHMIKY 712
           +HM+KY
Sbjct: 164 QHMLKY 169



 Score = 75.8 bits (178), Expect = 6e-15
 Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
 Frame = +3

Query: 273 QVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTPK 452
           ++Y+  +DR  P+   RW+  + ++A F IRI+  +GWYIV Y L IY LNLF+AFLTPK
Sbjct: 20  RLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLNLFLAFLTPK 79

Query: 453 IDPAMD---LDDDENGPALPT 506
            DP+++    D++     LPT
Sbjct: 80  FDPSVEQAMKDEEIEEGVLPT 100


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 494 CITYQASEEFRPFIRRLPEFKFWLSVTKSTLIAFCC--TFVD 613
           CI Y+ ++EF  F+ +     F         +AFCC  T +D
Sbjct: 61  CIVYEKNKEFIVFVSKADSTGFGSKGVSCNSLAFCCLVTLID 102


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/57 (19%), Positives = 24/57 (42%)
 Frame = +2

Query: 203 WTEMIYLLKLQEKEYCLRLDTNIAGLSEYIRQMDPSRKDTVGWKCVGHGCIYYPHNY 373
           W   +  + + E E+C  +   +     ++R    + ++ + WK V   C  +P  Y
Sbjct: 168 WQVFVGRMNMNEHEHCYPMSLIMKREDTWLRYYHKNNRNPIDWKLV-QDCAMWPDGY 223


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 202  MDGNDLSSEITRKGILSQVGHEYRRF 279
            +  + L S ++++G+L+Q GHE   F
Sbjct: 937  LSSSSLKSPLSKEGVLNQQGHEQYNF 962


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 386 VYCHICVGYLPFKLVHCIL 442
           VYCH C  Y P +  HC L
Sbjct: 182 VYCHTCHLYRPPRASHCHL 200


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 140 IYSIFVQIIWSKPMRKTSKI*WTEMIYLLKLQEKEYCLRLDTNIAGLSEYIRQM 301
           + SIF    +    ++T K  +  +++  ++QE EYCLRL  +   +   I+ M
Sbjct: 78  VLSIFYDCFFFLKEQQTLK--FIIIVFQSEIQENEYCLRLLASTGFIPVLIKAM 129


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 583 FNSFLLYFCGCFQYSSILAYSSYVFHNIILYYYEETNQAYD 705
           FNSF L F     +  I   S  +  N ILY  +  +Q YD
Sbjct: 340 FNSFKLCFVDETNFPIISTPSLVISSNSILYPKDSLDQIYD 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,674
Number of Sequences: 5004
Number of extensions: 64276
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)