Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30648
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0042 + 317586-317640,318128-318185,318799-319236,320426-32... 93 2e-19
08_02_0134 - 13021294-13021350,13021478-13021658,13022383-130224... 77 1e-14
06_03_1339 + 29445324-29445395,29445487-29445598,29445673-294457... 70 2e-12
08_02_0313 - 15659600-15659716,15660376-15660495,15660581-156606... 31 1.2
09_02_0318 - 7191763-7191879,7192375-7192494,7192568-7192666,719... 30 1.6
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 30 1.6
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 28 8.5
03_06_0604 - 35006004-35008580 28 8.5
>01_01_0042 +
317586-317640,318128-318185,318799-319236,320426-320467,
320468-320648,320838-320867
Length = 267
Score = 93.1 bits (221), Expect = 2e-19
Identities = 43/83 (51%), Positives = 54/83 (65%)
Frame = +3
Query: 261 TRISQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAF 440
T S+ +Q LDR TPHA RW+G+ V A + +R+ QG+YIVTY LGIY LNL I F
Sbjct: 84 TDASRAFQYYLDRSTPHATGRWIGTLAVAAIYALRVYLVQGFYIVTYGLGIYLLNLLIGF 143
Query: 441 LTPKIDPAMDLDDDENGPALPTR 509
L+P +DP +GPALPTR
Sbjct: 144 LSPMVDPEAHAAASSDGPALPTR 166
Score = 89.8 bits (213), Expect = 2e-18
Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 14/83 (16%)
Frame = +2
Query: 506 QASEEFRPFIRRLPEFKFWL--------------SVTKSTLIAFCCTFVDAFNIPVFWPI 643
+ S+EF+PFIRRLPEFKF + ++TK+ LIAF TF F++PVFWPI
Sbjct: 166 RGSDEFKPFIRRLPEFKFCIHTILLTFICLAFRYAITKAFLIAFVMTFFSVFDVPVFWPI 225
Query: 644 LVMYFITLFCITMKRQIKHMIKY 712
L+ Y++ LF +TMKRQI HMIKY
Sbjct: 226 LLCYWVVLFVLTMKRQIVHMIKY 248
>08_02_0134 -
13021294-13021350,13021478-13021658,13022383-13022433,
13025134-13025187,13026154-13026248,13026565-13026888
Length = 253
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = +3
Query: 270 SQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTP 449
S+ +Q LDR TPH RW+ A V AA+ +R+ G+YIVTYALGIY LNL IAFL+P
Sbjct: 41 SRRFQHLLDRSTPHVGRRWLAFAGVAAAYALRVWFAGGYYIVTYALGIYILNLLIAFLSP 100
Query: 450 KIDP 461
++DP
Sbjct: 101 QVDP 104
Score = 70.5 bits (165), Expect = 1e-12
Identities = 29/49 (59%), Positives = 37/49 (75%)
Frame = +2
Query: 566 SVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQIKHMIKY 712
S+ K+ IAF TF F++PVFWPIL+ Y++ LF +TMKRQI HMIKY
Sbjct: 177 SIVKAFCIAFVLTFFSVFDVPVFWPILLFYWVVLFTVTMKRQILHMIKY 225
>06_03_1339 +
29445324-29445395,29445487-29445598,29445673-29445756,
29446156-29446182,29446879-29446966,29447070-29447151,
29447414-29447434,29448412-29448605,29449419-29449560,
29449805-29449889,29450123-29450250,29450940-29451032,
29451095-29451327,29453384-29453564,29454122-29454169
Length = 529
Score = 70.1 bits (164), Expect = 2e-12
Identities = 28/49 (57%), Positives = 38/49 (77%)
Frame = +2
Query: 566 SVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQIKHMIKY 712
++TK+ +AF TF F++PVFWPIL+ Y++ LF +TMKRQI HMIKY
Sbjct: 456 AITKAFCVAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQIVHMIKY 504
>08_02_0313 -
15659600-15659716,15660376-15660495,15660581-15660679,
15660802-15660913,15661025-15661128,15661316-15661495,
15661612-15661881,15662529-15662825,15663432-15663677
Length = 514
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 8 GANFQLLNFIVINCFQINNLKYYAISKIYIVSLFNAGKI 124
GAN++L++ V NC N ISKIY+++ FN+ +
Sbjct: 112 GANYRLIDIPVSNCLNSN------ISKIYVLTQFNSASL 144
>09_02_0318 -
7191763-7191879,7192375-7192494,7192568-7192666,
7192846-7192957,7193058-7193161,7193341-7193520,
7193611-7193880,7194364-7194660,7195283-7195477
Length = 497
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 8 GANFQLLNFIVINCFQINNLKYYAISKIYIVSLFNAGKI 124
GAN++L++ V NC N +SKIY+++ FN+ +
Sbjct: 95 GANYRLIDIPVSNCLNSN------VSKIYVLTQFNSASL 127
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 252 SGWTRISQVYQSTLDRWTPHAKTRWVGSALVM 347
+G RI++ Y+S+ WTP A +G ALV+
Sbjct: 539 NGSVRINKWYESSARAWTPSAAASSIGQALVV 570
>08_02_1540 +
27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 483 ENGPALPTRLVKNLDHSLDDYQNSSFGC 566
E+ P PTR + L +S DY++S +GC
Sbjct: 282 ESPPGSPTREEEPLLNSYTDYEDSIYGC 309
>03_06_0604 - 35006004-35008580
Length = 858
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 240 RNIVSGWTRISQVYQSTLDRWTPHAKTRWVGSALV 344
+N SG S YQ +LDR T + +W G V
Sbjct: 155 QNFTSGMNLTSASYQFSLDRNTGNLTLKWTGGGTV 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,488,047
Number of Sequences: 37544
Number of extensions: 347873
Number of successful extensions: 762
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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