Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30648
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)                  34   0.100
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)               28   6.5  
SB_36761| Best HMM Match : DUF1279 (HMM E-Value=0.23)                  28   8.6  
SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)
          Length = 1605

 Score = 34.3 bits (75), Expect = 0.100
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 396  TYALGIYHLNLFIAFLTPKIDPAMDLDDDENGPAL--PTRLVKNLDHSLDDYQNS 554
            TY LG YHL  F+    P++       D   GP +   + +V N D SL+D Q +
Sbjct: 1360 TYELGYYHLKFFLCNFVPELLSHSRTQDSFLGPMMIYTSGIVYNEDESLEDAQRN 1414


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 663 VMKYITRIGQNTGILKASTKVQQKAIKVLLVTDSQNLNSGN 541
           ++K +T   Q+T     ST VQ+K IK+ +  D+ N +  N
Sbjct: 491 IIKAVTSTSQHTHSDVRSTSVQEKTIKIKVTFDANNESEKN 531


>SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)
          Length = 272

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = +2

Query: 311 RKDTVGWKCVGHGCIYYP-HNY*TRMV----YCHICVGYLPFK 424
           R   + W C+ H  + YP + Y   ++     CHI + YL ++
Sbjct: 228 RVSVISWSCIRHIVVVYPSYRYRASVILSSCICHIVIVYLSYR 270


>SB_36761| Best HMM Match : DUF1279 (HMM E-Value=0.23)
          Length = 244

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 563 LSVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFC 673
           +++  S L+  C T V  F IP+ +P  + Y   +FC
Sbjct: 184 VNLAVSGLLTVCTTMVMTFYIPLIYPKSMDYLNQVFC 220


>SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 339 THFQPTVSLREGSICLMYSDKPAIFVSN--LRQYSFS 235
           T F PT + R  S+  + + KP   V N  +R+Y+F+
Sbjct: 115 TRFNPTATARRSSLGSLSTHKPVFTVDNKAIRKYAFT 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,123,797
Number of Sequences: 59808
Number of extensions: 437884
Number of successful extensions: 923
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)