Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30648
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54281-5|CAA91047.1|  191|Caenorhabditis elegans Hypothetical pr...   107   6e-24
AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical ...    31   0.82 

>Z54281-5|CAA91047.1|  191|Caenorhabditis elegans Hypothetical
           protein F46C5.8 protein.
          Length = 191

 Score =  107 bits (258), Expect = 6e-24
 Identities = 46/69 (66%), Positives = 56/69 (81%)
 Frame = +2

Query: 506 QASEEFRPFIRRLPEFKFWLSVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMK 685
           + ++EFRPF+RRLPEFKFW S  K+TLIA  CTF + F++PVFWPILVMYF  L  +T+K
Sbjct: 99  KTNDEFRPFMRRLPEFKFWHSFMKATLIAITCTFFEFFDVPVFWPILVMYFFILTFLTLK 158

Query: 686 RQIKHMIKY 712
           RQI HMIKY
Sbjct: 159 RQIMHMIKY 167



 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 42/77 (54%), Positives = 57/77 (74%)
 Frame = +3

Query: 279 YQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTPKID 458
           YQ  LDR TPH   RWV + + +  F  RII  QG+YIV YA+GIY+LNLF+ FLTP ID
Sbjct: 23  YQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNLFLLFLTPSID 82

Query: 459 PAMDLDDDENGPALPTR 509
           PA++ +D+++GP LP++
Sbjct: 83  PALEFEDEDDGPVLPSK 99


>AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical
           protein Y55F3C.9 protein.
          Length = 711

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 266 NIAGLSEYIRQMDPSRKDTVGWKCVGHGCIYYPHNY*TRMVYCH-ICVGYLPFKLVHC 436
           N     EY+ ++  +R   + W   G   I+YP  +  +M+  H +C+G++ F +VHC
Sbjct: 80  NFCAQREYVPRLIFNRISILIW---GSLWIFYPLIHSDKMLLIHSVCLGFIIFIVVHC 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,163,594
Number of Sequences: 27780
Number of extensions: 346841
Number of successful extensions: 951
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)