Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30648
(714 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39220.1 68417.m05552 RER1A protein identical to SP|O48670 RE... 106 1e-23
At2g23310.2 68415.m02783 RER1C protein identical to SP|Q9ZWI7 RE... 104 7e-23
At2g23310.1 68415.m02782 RER1C protein identical to SP|Q9ZWI7 RE... 104 7e-23
At2g21600.1 68415.m02569 RER1B protein identical to SP|O48671 RE... 104 7e-23
At2g18240.2 68415.m02126 RER1 protein, putative similar to SP|O4... 95 5e-20
At2g18240.1 68415.m02125 RER1 protein, putative similar to SP|O4... 95 5e-20
At5g48300.1 68418.m05966 glucose-1-phosphate adenylyltransferase... 31 1.0
At4g00370.1 68417.m00051 sugar transporter family protein contai... 28 5.3
At5g06260.1 68418.m00700 nucleolar protein-related contains weak... 27 9.3
>At4g39220.1 68417.m05552 RER1A protein identical to SP|O48670 RER1A
protein (AtRER1A) {Arabidopsis thaliana}
Length = 191
Score = 106 bits (255), Expect = 1e-23
Identities = 45/69 (65%), Positives = 56/69 (81%)
Frame = +2
Query: 506 QASEEFRPFIRRLPEFKFWLSVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMK 685
+ S+EF+PFIRRLPEFKFW S+TK+ IAF TF F++PVFWPIL+ Y+I LF +TM+
Sbjct: 100 RGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMR 159
Query: 686 RQIKHMIKY 712
RQI HMIKY
Sbjct: 160 RQIAHMIKY 168
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/79 (46%), Positives = 53/79 (67%)
Frame = +3
Query: 273 QVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTPK 452
++YQ LD+ TPHA RW+G+ +V + +R+ QG+YI+ Y LGIY LNL I FL+P
Sbjct: 24 RIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPL 83
Query: 453 IDPAMDLDDDENGPALPTR 509
+DP + +GP+LPTR
Sbjct: 84 VDP--EAGGVSDGPSLPTR 100
>At2g23310.2 68415.m02783 RER1C protein identical to SP|Q9ZWI7 RER1C
protein (AtRER1C) {Arabidopsis thaliana}
Length = 211
Score = 104 bits (249), Expect = 7e-23
Identities = 40/67 (59%), Positives = 57/67 (85%)
Frame = +2
Query: 512 SEEFRPFIRRLPEFKFWLSVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQ 691
S+E+RPF+RRLPEFKFWLS+ ++ +I F TF + F++PVFWPIL+ Y++ LF +TM++Q
Sbjct: 123 SDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQ 182
Query: 692 IKHMIKY 712
I+HMIKY
Sbjct: 183 IQHMIKY 189
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/80 (46%), Positives = 51/80 (63%)
Frame = +3
Query: 270 SQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTP 449
SQ Q LD+ PH RW+ V+ +I+R+ +G+YI+TYA+GIY LNL IAFL+P
Sbjct: 45 SQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSP 104
Query: 450 KIDPAMDLDDDENGPALPTR 509
+ DP L +G +LPTR
Sbjct: 105 QEDPEASL---TSGGSLPTR 121
>At2g23310.1 68415.m02782 RER1C protein identical to SP|Q9ZWI7 RER1C
protein (AtRER1C) {Arabidopsis thaliana}
Length = 212
Score = 104 bits (249), Expect = 7e-23
Identities = 40/67 (59%), Positives = 57/67 (85%)
Frame = +2
Query: 512 SEEFRPFIRRLPEFKFWLSVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQ 691
S+E+RPF+RRLPEFKFWLS+ ++ +I F TF + F++PVFWPIL+ Y++ LF +TM++Q
Sbjct: 123 SDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQ 182
Query: 692 IKHMIKY 712
I+HMIKY
Sbjct: 183 IQHMIKY 189
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/80 (46%), Positives = 51/80 (63%)
Frame = +3
Query: 270 SQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTP 449
SQ Q LD+ PH RW+ V+ +I+R+ +G+YI+TYA+GIY LNL IAFL+P
Sbjct: 45 SQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSP 104
Query: 450 KIDPAMDLDDDENGPALPTR 509
+ DP L +G +LPTR
Sbjct: 105 QEDPEASL---TSGGSLPTR 121
>At2g21600.1 68415.m02569 RER1B protein identical to SP|O48671 RER1B
protein (AtRER1B) {Arabidopsis thaliana}
Length = 195
Score = 104 bits (249), Expect = 7e-23
Identities = 43/69 (62%), Positives = 56/69 (81%)
Frame = +2
Query: 506 QASEEFRPFIRRLPEFKFWLSVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMK 685
+ S+EF+PFIRRLPEFKFW S+TK+ IAF TF F++PVFWPIL+ Y++ LF +TM+
Sbjct: 99 RGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMR 158
Query: 686 RQIKHMIKY 712
RQI HMIK+
Sbjct: 159 RQIAHMIKH 167
Score = 81.8 bits (193), Expect = 4e-16
Identities = 35/79 (44%), Positives = 53/79 (67%)
Frame = +3
Query: 273 QVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTPK 452
+VYQ LD+ TPH+ RW+G+ + + +R+ + G+YI++Y LGIY LNL I FL+P
Sbjct: 24 RVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPL 83
Query: 453 IDPAMDLDDDENGPALPTR 509
+DP +++ D G LPTR
Sbjct: 84 VDPELEVSD---GATLPTR 99
>At2g18240.2 68415.m02126 RER1 protein, putative similar to
SP|O48671 RER1B protein (AtRER1B) {Arabidopsis
thaliana}, SP|O48670 RER1A protein (AtRER1A)
{Arabidopsis thaliana}; contains Pfam profile PF03248:
Rer1 family
Length = 220
Score = 94.7 bits (225), Expect = 5e-20
Identities = 37/67 (55%), Positives = 52/67 (77%)
Frame = +2
Query: 512 SEEFRPFIRRLPEFKFWLSVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQ 691
S+E++PF+RRLPEFKFW + TK+ ++AF TF ++PVFWPIL+ Y++ L+ +TMKR
Sbjct: 105 SDEYKPFVRRLPEFKFWYAATKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRL 164
Query: 692 IKHMIKY 712
I HM KY
Sbjct: 165 IVHMFKY 171
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/75 (34%), Positives = 47/75 (62%)
Frame = +3
Query: 270 SQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTP 449
S+ +Q+ LDR P+ RW+ + + +I R+ + G+++++Y L Y LNL I FL+P
Sbjct: 27 SKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATYILNLLIGFLSP 86
Query: 450 KIDPAMDLDDDENGP 494
K+DP ++ D ++ P
Sbjct: 87 KVDPELEALDPDSLP 101
>At2g18240.1 68415.m02125 RER1 protein, putative similar to
SP|O48671 RER1B protein (AtRER1B) {Arabidopsis
thaliana}, SP|O48670 RER1A protein (AtRER1A)
{Arabidopsis thaliana}; contains Pfam profile PF03248:
Rer1 family
Length = 221
Score = 94.7 bits (225), Expect = 5e-20
Identities = 37/67 (55%), Positives = 52/67 (77%)
Frame = +2
Query: 512 SEEFRPFIRRLPEFKFWLSVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQ 691
S+E++PF+RRLPEFKFW + TK+ ++AF TF ++PVFWPIL+ Y++ L+ +TMKR
Sbjct: 105 SDEYKPFVRRLPEFKFWYAATKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRL 164
Query: 692 IKHMIKY 712
I HM KY
Sbjct: 165 IVHMFKY 171
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/75 (34%), Positives = 47/75 (62%)
Frame = +3
Query: 270 SQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTP 449
S+ +Q+ LDR P+ RW+ + + +I R+ + G+++++Y L Y LNL I FL+P
Sbjct: 27 SKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATYILNLLIGFLSP 86
Query: 450 KIDPAMDLDDDENGP 494
K+DP ++ D ++ P
Sbjct: 87 KVDPELEALDPDSLP 101
>At5g48300.1 68418.m05966 glucose-1-phosphate adenylyltransferase
small subunit 1 (APS1) / ADP-glucose pyrophosphorylase
(ADG1) identical to SP|P55228
Length = 520
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 8 GANFQLLNFIVINCFQINNLKYYAISKIYIVSLFNAGKI 124
GAN++L++ V NC N ISKIY+++ FN+ +
Sbjct: 118 GANYRLIDIPVSNCLNSN------ISKIYVLTQFNSASL 150
>At4g00370.1 68417.m00051 sugar transporter family protein contains
Pfam profile PF00083: major facilitator superfamily
protein
Length = 541
Score = 28.3 bits (60), Expect = 5.3
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +3
Query: 243 NIVSGWTRISQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGI--- 413
N++S W +S+ +S ++ ++GS +A F +ITK GW V Y+ G
Sbjct: 246 NMLSKWIPVSERSRSLALVYSG----MYLGSVTGLA-FSPMLITKFGWPSVFYSFGSLGS 300
Query: 414 --YHLNLFIAFLTPKIDPAMDLDDDE 485
+ L L A+ +PK DP DL ++E
Sbjct: 301 IWFLLWLKFAYSSPKDDP--DLSEEE 324
>At5g06260.1 68418.m00700 nucleolar protein-related contains weak
similarity to nucleolar protein C7C (GI:13540302)
[Rattus norvegicus]
Length = 424
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 410 TQRICDNIPSLFSNYADNKCSHDQRTSNP 324
TQ+ D++ SLF + A N S+DQ S P
Sbjct: 21 TQKKLDDLKSLFVSLASNSQSNDQYVSYP 49
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,855,969
Number of Sequences: 28952
Number of extensions: 307272
Number of successful extensions: 739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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