Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30646X
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   3.2  
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.6  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   5.6  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    24   7.4  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    24   7.4  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    24   9.8  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 154 NKITETPMEDENNEE 198
           N +  TP +DENNEE
Sbjct: 255 NAVPSTPADDENNEE 269


>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 190

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 148 KENKITETPMEDENNEEPDWPHI 216
           K  KI  +   D+N+EE  WP +
Sbjct: 135 KRIKIISSSQPDDNDEESTWPGV 157


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
 Frame = -3

Query: 339 YFCTALPGVASCIYPFYG-AEHT 274
           YFCT       C+YP     EHT
Sbjct: 67  YFCTCSEDATVCVYPIDSPTEHT 89


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 166 ETPMEDENNEEPDWPHIPKFKKHK 237
           E   + ENNE+ D+   P   KHK
Sbjct: 148 EETTKPENNEKDDFEEEPPLPKHK 171


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +1

Query: 154 NKIT--ETPMEDENNEEPDWPH 213
           NKI+  ET   D++ E+PDW H
Sbjct: 149 NKISKPETVPPDDDPEKPDWIH 170


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 133 MENSEKENKITETPMEDENNEEPD 204
           MEN++ E+  T+  +E+++NE  D
Sbjct: 5   MENNKDESISTKNALEEKSNETKD 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,452,967
Number of Sequences: 5004
Number of extensions: 25252
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)