Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30646X
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50017| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)                   27   5.5  
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)            27   5.5  
SB_19376| Best HMM Match : RVT_1 (HMM E-Value=6.7e-16)                 27   5.5  
SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_56411| Best HMM Match : MoCF_biosynth (HMM E-Value=4.8)             27   7.3  
SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7)             27   7.3  
SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  

>SB_50017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 326 LYLE*PLVYIHSTVLSIPVH*FSHSDTSLPL 234
           LYL  P  ++  T  S+P     H+DT LPL
Sbjct: 662 LYLTSPSKFVGGTNTSLPAGELVHADTGLPL 692


>SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)
          Length = 637

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 246 CVRMRELMYGYAQHRRMDIYKRLLQVELCRNIALIHEENGYDCMDVE 386
           CV    L+YG+ +    D  + LL V    NI L H+++ +   +VE
Sbjct: 156 CVADDILVYGHPESDHDDKLRNLLDVCARNNIKLNHQKSVFKITEVE 202


>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
          Length = 1682

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 148 KENKITE-TPMEDENNEEPDWPHIPKFKKHKGRLVSE 255
           K  ++ E +  EDEN EEPD P   K ++   +L+++
Sbjct: 690 KRKRVKEMSESEDENEEEPDTPSKSKGRRKIRKLLTD 726


>SB_19376| Best HMM Match : RVT_1 (HMM E-Value=6.7e-16)
          Length = 274

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 246 CVRMRELMYGYAQHRRMDIYKRLLQVELCRNIALIHEENGYDCMDVE 386
           CV    L+YG+ +    D  + LL V    NI L H+++ +   +VE
Sbjct: 158 CVADDILVYGHPESDHDDKLRNLLDVCARNNIKLNHQKSVFKITEVE 204


>SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 32  RTIKKDLSQKNC*TLNNCI*EEYKQLP 112
           +T KKD S++ C T+++C+  E K+LP
Sbjct: 352 KTSKKDESKEECGTIDDCV--ERKKLP 376


>SB_56411| Best HMM Match : MoCF_biosynth (HMM E-Value=4.8)
          Length = 358

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -3

Query: 336 FCTALPGVASCIYPFYGAEHTRTLVLSF*HKSPFVFLKFRYVRPI 202
           F   LPGV   +YP + A  TR   L      P V   FRYV P+
Sbjct: 263 FSLCLPGVFRYVYPVFSAMFTRCFPLCL----PGV---FRYVYPV 300


>SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7)
          Length = 241

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 151 ENKITETPMEDENNEEPD 204
           E+K+ +TP+EDE +E+ D
Sbjct: 82  ESKLPDTPVEDEESEDDD 99


>SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -2

Query: 358 SSWISAIFLHSSTWSSLLYISILRC*AYPYISSLILTQVSLCVS 227
           ++W+ AIF+  +   SLLY+  L    Y ++ SLI + + + VS
Sbjct: 154 TTWLFAIFVSVAWLCSLLYLE-LEASLYVWVPSLIFSILIIGVS 196


>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 246 CVRMRELMYGYAQHRRMDIYKRLLQVELCRNIALIHEENGYDCMDVE 386
           CV    L+YG+++    +  + LL V    NI L H+++ +   +VE
Sbjct: 186 CVADDILVYGHSESDHDEKLRNLLDVCARNNIKLNHQKSVFKTTEVE 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,582,185
Number of Sequences: 59808
Number of extensions: 187810
Number of successful extensions: 526
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)