Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30646X
         (395 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    23   5.4  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    22   7.1  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    22   9.4  

>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 8   ILSNYFIERTIKKDLSQK 61
           +L NYF+ RT+  D  +K
Sbjct: 594 LLRNYFVGRTLHYDTDEK 611


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 82  IIQCLAILLTQILFYCTFYKVI 17
           I  C++ILL+Q +F+    ++I
Sbjct: 284 IALCISILLSQTMFFLLISEII 305


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +1

Query: 130 FMENSEKENKITETPMEDENNEEPDWPHIPKF 225
           +++N      I +TP E    ++PD+ ++  F
Sbjct: 212 YLQNISSSRSIEKTPFELWYGKQPDYSNLHIF 243


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 358,354
Number of Sequences: 2352
Number of extensions: 6022
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31212099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)