Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30646X
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   0.55 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   3.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   3.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   9.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   9.0  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 0.55
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 280 AYPYISSLILTQVSLCVS*ISVCAANQAPHC 188
           A+P I+ ++L  +   +S    C A +  HC
Sbjct: 49  AFPSITLIVLGSIIFVISFFGCCGAIRESHC 79


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 23  FIERTIKKDLSQKNC*TLNNCI 88
           F +RT++KDLS   C    +CI
Sbjct: 133 FFKRTVRKDLSYA-CREEKSCI 153


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 23  FIERTIKKDLSQKNC*TLNNCI 88
           F +RT++KDLS   C    +CI
Sbjct: 133 FFKRTVRKDLSYA-CREEKSCI 153


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 308 LVYIHSTVLSI 276
           +VY H TVLSI
Sbjct: 31  IVYFHVTVLSI 41


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 178 EDENNEEPDWPH 213
           E+E+NE  +W H
Sbjct: 181 EEESNENYNWEH 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,446
Number of Sequences: 438
Number of extensions: 1922
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)