Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30646X
         (395 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02750.1 68417.m00375 pentatricopeptide (PPR) repeat-containi...    29   1.1  
At3g16510.1 68416.m02107 C2 domain-containing protein contains s...    28   2.6  
At1g79410.1 68414.m09254 transporter-related low similarity to o...    27   4.5  
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea...    26   7.9  
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea...    26   7.9  
At4g30080.1 68417.m04278 transcriptional factor B3 family protei...    26   7.9  

>At4g02750.1 68417.m00375 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 781

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 249 VRMRELMYGYAQHRRMDIYKRLLQVELCRNIA 344
           V    ++ GY Q  RM++ K L  V  CRN++
Sbjct: 313 VSWNAMLAGYVQGERMEMAKELFDVMPCRNVS 344


>At3g16510.1 68416.m02107 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 360

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +1

Query: 136 ENSEKENKITETPMEDENNEEPDWPHIPKFK-----KHKGRL 246
           ++S K +K  +TP++     EP W H  KF       H+GRL
Sbjct: 36  DDSRKNHK-EKTPIDRTGESEPTWNHTVKFSVDQRLAHEGRL 76


>At1g79410.1 68414.m09254 transporter-related low similarity to
           organic anion transporter 3 [Rattus norvegicus]
           GI:5545293; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 515

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 345 VLYFCTALP-GVASCIYPFYGAEHTRTLVLSF*HKSPFVFLK 223
           VLY CT++P G+ S    F+  E  R L L   +K     LK
Sbjct: 236 VLYLCTSIPAGIHSIFIYFFALESPRWLHLEGKNKEAIEVLK 277


>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
           family protein similar to YTM1 - Homo sapiens,
           EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
           repeat (7 copies,1 weak);
          Length = 402

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 358 SSWISAIFLHSSTWSSLLYIS 296
           SSWISA   H S+W  LL  S
Sbjct: 358 SSWISACKWHKSSWFHLLSAS 378


>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
           family protein similar to YTM1 - Homo sapiens,
           EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
           repeat (7 copies,1 weak);
          Length = 433

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 358 SSWISAIFLHSSTWSSLLYIS 296
           SSWISA   H S+W  LL  S
Sbjct: 358 SSWISACKWHKSSWFHLLSAS 378


>At4g30080.1 68417.m04278 transcriptional factor B3 family protein
           contains Pfam profile: PF02362 B3 DNA binding domain
          Length = 670

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 351 HEENGYDCMDVENRP 395
           H EN YDC+D  N P
Sbjct: 45  HAENAYDCVDFGNLP 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,271,189
Number of Sequences: 28952
Number of extensions: 123465
Number of successful extensions: 326
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)