Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30645
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    29   0.41 
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    28   0.95 
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   3.8  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    26   3.8  
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    26   3.8  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   3.8  
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    25   6.7  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   8.8  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   8.8  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   8.8  

>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 406 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 314
           SD ++ G+  P    +PA  +PLS+R+  P Y+P
Sbjct: 30  SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = -2

Query: 353 AAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPMTLLAFPQPPIITSYIGSDSCGPVVSA 174
           AA  T      FP       F   +  + S+F ++LL     P +TSY G D+   V++ 
Sbjct: 292 AAAETENPAKAFPVAVRQTLFRIAIFYILSLFIVSLLISGADPRLTSYHGVDASPFVLAI 351

Query: 173 MWASFAAL 150
             A+  AL
Sbjct: 352 KDANIKAL 359


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 532  PWRLRRKRTPSVWRSR 579
            PW  R + TPSVW S+
Sbjct: 1511 PWNTRPRSTPSVWLSQ 1526


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = +1

Query: 244 KSVIGKIEPSPIRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVK--LFHSYPGLIPNL 417
           KS IG    SP++L+   P F+      +  F  +  L   D  VK  L+ S    I N 
Sbjct: 323 KSTIGNTSNSPLQLRASFPAFVNAVIHFLLEFKNVRRLERKDLSVKGMLYDSDSQQILNR 382

Query: 418 SQFTTSESAQAGVPQAPG 471
            +   S S      +A G
Sbjct: 383 LRERVSGSTAQSADEASG 400


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = +1

Query: 226 GGW-----GNAKSVIGKIEPSPIRLKLKAPEFLTEGNIVVFG 336
           GGW     G+   + G+I   P  L L  P +  EG+ ++ G
Sbjct: 187 GGWFCPCHGSHYDISGRIRRGPAPLNLAIPAYTFEGSKIIIG 228


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 419 ERFGIRPGYEWNSFTLASSGDNAAIP 342
           E+ G R GY+ +S   ASS  N+ IP
Sbjct: 155 EKMGYRGGYQMHSTPWASSPRNSTIP 180


>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 217 VMIGGWGNAKSVIGKIEPSPIRLKLKAPEF 306
           V + GW  AKS+I K+ PS  RL    P F
Sbjct: 57  VFLTGWA-AKSIIVKLLPSLWRLSTLIPSF 85


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 456 ATGSWKIEXXXXXXXXXXCTQHPLATLEATEETHPLRLEEPVY 584
           ATG+W              T  P+A ++ T E +   L  PVY
Sbjct: 204 ATGAWTASLLPNDHTRFLATGQPVAYIKLTPEEYIRFLTNPVY 246


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 412 SGSDQDMNGIASPSRPAEI-MPLSQRT 335
           SGS  D+  I SP+ PAE   P + RT
Sbjct: 82  SGSSSDLLNIESPASPAEASSPFTVRT 108


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
 Frame = -2

Query: 470 PGACGTPACA-----DSDVVNWERFGIRPGYEWNSFTLASSGDNAAIPTNPKTTIFPSVK 306
           P  C  P CA       ++    R         N+   A++ ++A    +P   + PS  
Sbjct: 53  PHVCTFPGCAKRFSRSDELTRHARIHTNANSRRNAAAAAAANNSARSSNSPAGNLEPSTN 112

Query: 305 NSGAFNFNLIGLGSIFPMTLLAFPQ------PPIITSYI 207
           N+G    N     ++ P   +  PQ      PP+ T+ +
Sbjct: 113 NAGVHMTNASMNPNVNPSYPVFIPQVGMSVAPPVATAAV 151


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 395 YEWNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGS 264
           Y WN    A SG  +A+    ++T   SVK S   +F  +GLG+
Sbjct: 203 YVWN----ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,929
Number of Sequences: 5004
Number of extensions: 51438
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)