Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30645
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0039 - 12718972-12720699 31 0.74
06_01_0172 + 1362101-1363708 31 0.74
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 0.74
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 29 2.3
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 2.3
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 29 3.0
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 5.2
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 6.9
06_03_0013 - 15393830-15394060,15394238-15394672 27 9.1
>07_03_0039 - 12718972-12720699
Length = 575
Score = 31.1 bits (67), Expect = 0.74
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 326 TIFPSVKNSGAFNFNLIGLGSIFPMTLLAFPQPPIITSYIGS-DSC-GPVVSA 174
++ P+V F F LG +FP LL P P +ITS + S ++C GP+ A
Sbjct: 130 SLLPAVAALAHFGFPWSRLGLLFPTVLLRLP-PDLITSRLASLEACLGPLPRA 181
>06_01_0172 + 1362101-1363708
Length = 535
Score = 31.1 bits (67), Expect = 0.74
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 286 KLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYPGL--IPNLSQFTTSESAQAGVP 459
KL L NI++ G VGI LDA +K+ PGL P++ +TT SA G
Sbjct: 186 KLYITPNLVSCNILLKGLVGIG---DLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKG 242
Query: 460 QAPGKSK 480
G K
Sbjct: 243 DIEGAQK 249
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 306 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 416
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 282 VEIESPGILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVYYVGVCTGW 452
V++ G+ ++ +W+ G+IS GR W DP+P V YVG+ + W
Sbjct: 88 VDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQYVGL-SSW 146
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 294 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 431
SP +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 319 NIVVFGFVGIAALSPLDARVKLFHSY-PGLIPNLSQFTTSESAQAGVPQAPGKSKCHRL 492
N VVF V I ++ +++LF P N QF T E ++G+PQ + HR+
Sbjct: 36 NPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRV 94
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 334 GFVGIAALSPLDA-RVKLFHSYPGLIPNLSQFTTSESAQAGVPQAPGKS 477
G +G+ S D+ +K S P L PNLS T++E + VP+ P S
Sbjct: 1515 GKLGLPNFSLEDSIPLKHLKSVPDLFPNLSLGTSNEYLRNCVPELPNSS 1563
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -3
Query: 403 DQDMNGIASPSRPAEIMPLS-QR----TQKPRYSPPLRIP 299
D+ + SP+ PA P S QR Q PRY PPLR P
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>06_03_0013 - 15393830-15394060,15394238-15394672
Length = 221
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 421 QFTTSESAQAGVPQAPGKSK-CHRLHL*QLLVRSTPWLPWRLRRKRTPSVWRSRY 582
+ T S A+A Q G SK R H + + W W +RTP+VW Y
Sbjct: 135 KMTVSVGAEAEWLQREGSSKEWIRWHCVGTVAKRRAWAAWT---RRTPNVWNHDY 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,551,619
Number of Sequences: 37544
Number of extensions: 369382
Number of successful extensions: 1066
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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