Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30645
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)           28   5.3  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          28   7.0  
SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34)                27   9.3  
SB_4950| Best HMM Match : ResIII (HMM E-Value=1.4)                     27   9.3  

>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
          Length = 225

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 282 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 434
           + I + GI +  +   FWV + S  +  G     I    W+DP+P  V YY+
Sbjct: 1   LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 274 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYPG 402
           P  ++ K P  L +G I+  GF+G ++AL      ++LF    G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143


>SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1079

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 506 SCYRCSRWH--FDFPGACGTPACADSDVVNWERFGIRPGYEW 387
           +C+ C + H  FD  GAC T  C +  + + E F + PGY W
Sbjct: 345 ACF-CRKNHHRFDRFGACFT--CPNGMICSNETFTLAPGYYW 383


>SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 512 TSSCYRCSRWHFDFP 468
           TS   RC RW FDFP
Sbjct: 279 TSLAPRCERWFFDFP 293


>SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34)
          Length = 240

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 345 DSGIISAGREGEAIPFISWSDPEPFPVYYVGVCTG 449
           D G +  G E   I F+ WS  + F      VCTG
Sbjct: 200 DKGNVKMGNELSDISFVLWSVEQEFASNAGAVCTG 234


>SB_4950| Best HMM Match : ResIII (HMM E-Value=1.4)
          Length = 766

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +1

Query: 229 GWGNAKSVIGKIEPSPIRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLF--HSYPG 402
           GWG    V+GK   +P RL +   +   +G I    + GI+ +   D  V++    + PG
Sbjct: 618 GWGTVHRVMGKTIQTPRRLFI--IDHSLQGWITNAVYTGISRVRRADQIVRVIPPENTPG 675

Query: 403 -LIPNLSQFTTSE 438
            L+P   Q T SE
Sbjct: 676 ALVPTGLQATPSE 688


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,440,410
Number of Sequences: 59808
Number of extensions: 403304
Number of successful extensions: 1196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)