Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30645
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-30|CAB61063.1|  365|Caenorhabditis elegans Hypothetical...    30   1.2  
Z48045-2|CAA88100.2|  967|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF435952-1|AAL30828.1|  967|Caenorhabditis elegans Ser/Thr prote...    29   2.7  
AF016428-3|AAO26000.3|  445|Caenorhabditis elegans Ground-like (...    29   2.7  
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    28   4.7  
U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AL132948-30|CAB61063.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39B6A.39 protein.
          Length = 365

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
 Frame = +1

Query: 124 SSGSVQFKVRAANDAHIALTTGP---QESDPMYEVMIGGWGNAKSVIGKIEPSPIRLKL- 291
           ++G  ++K R+  D    LT  P   +E DP  +     W  A++    + P P+R+   
Sbjct: 70  ATGRTEYKTRSRFDLMDRLTKRPPRSEEMDPEAQKWCDVWPAARTFASSVVPLPVRMGTR 129

Query: 292 ----KAPEFLTEGNIVVFGFVGIAALSP 363
               K   F  EGN+ +        L+P
Sbjct: 130 PNVEKRAPFKKEGNLELVKIPNFLHLTP 157


>Z48045-2|CAA88100.2|  967|Caenorhabditis elegans Hypothetical
           protein C41C4.4 protein.
          Length = 967

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
 Frame = -2

Query: 614 EVLDLLKHQPIYRLLQT--EGVRFLRS-LQGSQGVLRTSSCYRCSRWHFDFPGACGTPAC 444
           E+   L+ +P+ R      +G  FL + L GS  VL+ SS  +     F+ P       C
Sbjct: 63  EIKWTLQEEPVLRSPSAVKQGFTFLPNPLDGSLYVLKNSSLKKLP---FNIPQLVHASPC 119

Query: 443 ADSDVVNWER------FGIRPGYEWNSFTLASSGDNAAIPTNPKTTIF 318
             +D + +        FGI P       TL+S+  +   P N K TIF
Sbjct: 120 KGNDGILYAGSKKDVWFGIDPKTGLKVETLSSASADRICPANQKQTIF 167


>AF435952-1|AAL30828.1|  967|Caenorhabditis elegans Ser/Thr protein
           kinase protein.
          Length = 967

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
 Frame = -2

Query: 614 EVLDLLKHQPIYRLLQT--EGVRFLRS-LQGSQGVLRTSSCYRCSRWHFDFPGACGTPAC 444
           E+   L+ +P+ R      +G  FL + L GS  VL+ SS  +     F+ P       C
Sbjct: 63  EIKWTLQEEPVLRSPSAVKQGFTFLPNPLDGSLYVLKNSSLKKLP---FNIPQLVHASPC 119

Query: 443 ADSDVVNWER------FGIRPGYEWNSFTLASSGDNAAIPTNPKTTIF 318
             +D + +        FGI P       TL+S+  +   P N K TIF
Sbjct: 120 KGNDGILYAGSKKDVWFGIDPKTGLKVETLSSASADRICPANQKQTIF 167


>AF016428-3|AAO26000.3|  445|Caenorhabditis elegans Ground-like (grd
           related) protein18 protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 341 TNPKTTIFPSVKNSGAFNFNLIGLGSIFPMTLLAFPQPPIITS 213
           T P + I+PS +N      +   L +I P  + ++PQPP+ T+
Sbjct: 66  TQPPSVIYPSYQNQQPLQPSSSYLANIPPF-MQSYPQPPLFTT 107


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 421 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSP 314
           G GSGS  D +G + P+R +  +P +     PR  P
Sbjct: 159 GSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194


>U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical
           protein W03B1.6 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 125 ETGKNWY*RLSSVATSMTLAMIVV 54
           ET + WY +LSS +T+M +A++ V
Sbjct: 15  ETFEKWYLKLSSTSTAMLIAILFV 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,348,026
Number of Sequences: 27780
Number of extensions: 290935
Number of successful extensions: 862
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)