Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30645
(621 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 24 1.0
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 24 1.0
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 24 1.0
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 5.5
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 21 7.3
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 21 7.3
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 21 7.3
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 21 7.3
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 7.3
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 21 7.3
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 7.3
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 7.3
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 7.3
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 21 9.7
AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropi... 21 9.7
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 24.2 bits (50), Expect = 1.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 284 NLIGLGSIFPMTLLAFPQPPII 219
+L G GSI+ MT++AF + +I
Sbjct: 133 SLFGCGSIWTMTMIAFDRYNVI 154
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 24.2 bits (50), Expect = 1.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 284 NLIGLGSIFPMTLLAFPQPPII 219
+L G GSI+ MT++AF + +I
Sbjct: 99 SLFGCGSIWTMTMIAFDRYNVI 120
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 24.2 bits (50), Expect = 1.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 284 NLIGLGSIFPMTLLAFPQPPII 219
+L G GSI+ MT++AF + +I
Sbjct: 9 SLFGCGSIWTMTMIAFDRYNVI 30
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.8 bits (44), Expect = 5.5
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 374 LASSGDNAAIPTNPKTTIFPSVK 306
+ASS N T TTI P VK
Sbjct: 949 VASSASNVTNVTTNLTTILPPVK 971
Score = 21.0 bits (42), Expect = 9.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 355 LSPLDARVKLFHSYPGLIPNLSQFTTSE 438
+SPL+ L S+P L+P F E
Sbjct: 427 ISPLNDWYSLASSWPALVPLALGFLAGE 454
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 7.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 408 PEPFPVYY 431
P PFPVYY
Sbjct: 114 PVPFPVYY 121
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 7.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 408 PEPFPVYY 431
P PFPVYY
Sbjct: 114 PVPFPVYY 121
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 7.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 408 PEPFPVYY 431
P PFPVYY
Sbjct: 114 PVPFPVYY 121
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 7.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 408 PEPFPVYY 431
P PFPVYY
Sbjct: 114 PVPFPVYY 121
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 408 PEPFPVYY 431
P PFPVYY
Sbjct: 347 PVPFPVYY 354
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 408 PEPFPVYY 431
P PFPVYY
Sbjct: 347 PVPFPVYY 354
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 408 PEPFPVYY 431
P PFPVYY
Sbjct: 347 PVPFPVYY 354
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 408 PEPFPVYY 431
P PFPVYY
Sbjct: 347 PVPFPVYY 354
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 7.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 408 PEPFPVYY 431
P PFPVYY
Sbjct: 336 PVPFPVYY 343
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 21.0 bits (42), Expect = 9.7
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 394 MNGIASPSRPAEIMPLSQRTQKPRY 320
+NG+ RP + SQR Q +Y
Sbjct: 318 LNGLEFAGRPQNLQLQSQRNQLIQY 342
>AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropin
releasing hormone-binding protein protein.
Length = 332
Score = 21.0 bits (42), Expect = 9.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -3
Query: 397 DMNGIASPSRPAEIMPLSQRTQK 329
++NG PS+ +PL QR+ +
Sbjct: 128 ELNGEVFPSKMDHQLPLKQRSSE 150
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,670
Number of Sequences: 438
Number of extensions: 4079
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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