Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30645
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22570.1 68418.m02636 WRKY family transcription factor contai...    29   2.5  
At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family...    29   3.3  
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta...    28   4.3  
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta...    28   4.3  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    28   5.7  
At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,...    27   7.6  
At5g13540.1 68418.m01563 expressed protein HERC2 - Homo sapiens,...    27   7.6  
At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein ...    27   7.6  
At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase / lon...    27   7.6  

>At5g22570.1 68418.m02636 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 289

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/63 (25%), Positives = 24/63 (38%)
 Frame = +3

Query: 396 SWSDPEPFPVYYVGVCTGWGATGSWKIEXXXXXXXXXXCTQHPLATLEATEETHPLRLEE 575
           +W D  P P+YY G    W   G   I+          C+ +     EA +    ++   
Sbjct: 99  NWRDDSPDPIYYDGYL--WRKYGQKSIKKSNHQRSYYRCSYNKDHNCEARKHEQKIKDNP 156

Query: 576 PVY 584
           PVY
Sbjct: 157 PVY 159


>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 300

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 421 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPG 296
           G G  S++D+N    P  P +  P   +TQ+  Y P +  PG
Sbjct: 16  GPGQNSERDIN--QPPPPPPQSQPPPPQTQQQTYPPVMGYPG 55


>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +3

Query: 318 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTGW 452
           E++ +W+    G+IS G+     PF      W DP+P   V YVG+ + W
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147


>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +3

Query: 318 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTGW 452
           E++ +W+    G+IS G+     PF      W DP+P   V YVG+ + W
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 367 PAEIMPLSQRTQKPRYSPPLRIP 299
           P E+ P  ++   P+YSPP+ +P
Sbjct: 171 PLELPPFLKKPCPPKYSPPVEVP 193


>At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,
           EMBL:AF071172; isoform contains non-consensus GG
           acceptor splice site at intron 6
          Length = 788

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = -2

Query: 563 EGVRFLRSLQGSQGVLRTSSCYRCSRWHFDFPGACGTPACADSDVVNWERFGIRPGYEWN 384
           E +  + S+Q + G L  + C+R  RW   +      PA      V++++    P + W 
Sbjct: 431 ESIAVVHSIQET-GYLELACCFRKGRWSTHYTDLEKIPALKVGQFVHFQKGITEPRWGWR 489

Query: 383 SFTLASSG 360
           +    S G
Sbjct: 490 AAKPDSRG 497


>At5g13540.1 68418.m01563 expressed protein HERC2 - Homo sapiens,
           EMBL:AF071172; isoform contains non-consensus GG
           acceptor splice site at intron 6
          Length = 558

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = -2

Query: 563 EGVRFLRSLQGSQGVLRTSSCYRCSRWHFDFPGACGTPACADSDVVNWERFGIRPGYEWN 384
           E +  + S+Q + G L  + C+R  RW   +      PA      V++++    P + W 
Sbjct: 435 ESIAVVHSIQET-GYLELACCFRKGRWSTHYTDLEKIPALKVGQFVHFQKGITEPRWGWR 493

Query: 383 SFTLASSG 360
           +    S G
Sbjct: 494 AAKPDSRG 501


>At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 468

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 340 VGIAALSPLDARVKLFHSYPGLIPNLSQFTTSESAQAGVPQAPGKSKC 483
           VG  +L  +        S PG+ P+LS  T     +   P+ PG+ +C
Sbjct: 248 VGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPEC 295


>At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase /
           long-chain acyl-CoA synthetase nearly identical to acyl
           CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
          Length = 665

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 395 YEWNSFTLASSGDNAAIPTNPKTTIFPSVKNSG 297
           + WN F+L  + D A +P   KT I   +  SG
Sbjct: 201 FSWNEFSLMGNLDEANLPRKRKTDICTIMYTSG 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,924,631
Number of Sequences: 28952
Number of extensions: 283971
Number of successful extensions: 857
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)