Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30644
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    45   1e-05
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   0.77 
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    29   1.0  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    27   3.1  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   7.2  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    26   7.2  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   9.5  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 21/33 (63%), Positives = 26/33 (78%)
 Frame = +2

Query: 389 FGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 487
           F +LI G +RNPS++  LFS AILGFAL+EA G
Sbjct: 28  FSNLISGTSRNPSVRPHLFSMAILGFALTEATG 60


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 681 AHCRCNTHQSLHHYEGEVSKHSIPWLSTP 595
           A  R NT Q    Y G    HS PW S+P
Sbjct: 146 AAVRKNTEQEKMGYRGGYQMHSTPWASSP 174


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -3

Query: 630 VSKHSIPWLSTPDSIH*NLICRMAVVVFLKVNSLESEEQQDAIIRQNRPIASDKAKPRMA 451
           ++ HS   L++P+      I +    V+LKVNS  S    D +  QN      K  P ++
Sbjct: 529 LTNHSYWNLASPNKTIDGTIIKSTTNVYLKVNSETSLPTGDIVEWQNDITKPTKLDPNIS 588

Query: 450 YEN 442
           ++N
Sbjct: 589 FDN 591


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = -1

Query: 785 SGIEITAAQHNVYVQHFIADFCLYYIIK*IAFLLTRTVGVTHISPCITMRVRFPNI 618
           +GI + A +H  YV   +A FCLY+I+  + F  ++ +   ++   +T + + P +
Sbjct: 286 AGIILWANRHLAYV--IVAGFCLYFILSYMFF--SKLLDSRYVQRFVTSKRKQPTL 337


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 137 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 250
           + VC    R C ++ +   L   + +C  +    DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -3

Query: 213 VVAPVQSCRRWQTWLQGRSVWRQTAFCFYKVRRATITHTLRQYTSDLTLF 64
           VVAP+   ++W++ +Q +S  + TA  ++   R  +   + +Y   +T +
Sbjct: 293 VVAPLSLIKQWESEVQTKS--KLTAIVYHGASRYKLLKVIHEYDVVITTY 340


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 702 INCIPVDAHCRCNTHQSLHHYEGEVSKHSIPWLST 598
           I C+  +     N H + HH   + +  SIP  +T
Sbjct: 116 IRCVYSEGPSTANAHANAHHQPAQTTTTSIPTSAT 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,351
Number of Sequences: 5004
Number of extensions: 65697
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)