Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30644
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0490 + 22672241-22674679 31 0.81
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 30 1.9
07_03_1191 + 24690936-24691029,24691184-24691377 30 2.5
12_01_0591 - 4835894-4836328,4836343-4837882,4838911-4839050,484... 29 3.3
11_01_0710 - 5830475-5830595,5831498-5834124 29 3.3
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 29 4.3
01_05_0014 - 17162664-17163500 29 5.7
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 28 7.6
10_01_0078 - 1012031-1012084,1012998-1013105,1013610-1013661,101... 28 10.0
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 28 10.0
06_03_0032 - 15697530-15697669,15699215-15699437,15699823-156999... 28 10.0
02_01_0775 + 5775949-5777385 28 10.0
>01_05_0490 + 22672241-22674679
Length = 812
Score = 31.5 bits (68), Expect = 0.81
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 285 RPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPP 428
+P + + T+T P L R+W + E+VLEQ S + MP PP
Sbjct: 296 QPQQPVETVTPTPPPLAR-SRRWNPEMLEVVLEQESRVEETTMPPPPP 342
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 143 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 244
+CRQ + C CH++ LC G + S P T G
Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 143 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCCPT 259
VC++T+ C+Q CH + L G T S + D CC T
Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCCCT 77
>12_01_0591 -
4835894-4836328,4836343-4837882,4838911-4839050,
4840051-4840605
Length = 889
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +3
Query: 210 PLAAVPTHTQMVPAVLHSSLQCGPSRPH-----RSLRTLTLLPNSL 332
P A+P+ +P +LH + CG + P +SLRTLT L +L
Sbjct: 593 PRIAIPSDIVHLPCLLHLVIPCGTTLPDGIGSLKSLRTLTSLDLAL 638
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Frame = +1
Query: 109 CRAPHLIKTKCCLPPD*SPLQPGLPS--SATLHWCDHLQQYPPI----HRWYLLSYTALC 270
C +L+ C LP L LP+ T+HWC L P I H LS
Sbjct: 669 CSVTNLVVKFCTLPLSQWSLLHHLPALRHLTIHWCADLTSSPEIIQDLHSLKSLSLDGNE 728
Query: 271 SAVLPDHIG 297
A LPD +G
Sbjct: 729 QAELPDWLG 737
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 143 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCC 253
VC T++P +QVC+ +C G CS+ + D C
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRC 86
>01_05_0014 - 17162664-17163500
Length = 278
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 192 NSALVRPLAAVPTHTQMVPAVLHSSLQCGPSRPHRSLRTLT 314
N+ +PLA VP Q+ S ++ P RPH + R+L+
Sbjct: 42 NALWTQPLATVPGSLQIWSPPASSLVRPNPPRPHSAARSLS 82
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 199 HWCDHLQQYPPIHRWYLLSYT 261
HWC Q P IHR++L S T
Sbjct: 516 HWCQLEQSAPTIHRFFLPSTT 536
>10_01_0078 -
1012031-1012084,1012998-1013105,1013610-1013661,
1013926-1016603
Length = 963
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 699 NCIPVDAHCRCNTHQSLHHYEGEVSKHSI-PWLSTPDSIH*NLICRM 562
N I V A+C+ +S H GE++K I P ++ DSI +CRM
Sbjct: 471 NSIMVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSII-VCLCRM 516
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 106 YCRAPHLIKTKCCLPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSYTALCSAVLP 285
Y R L+ L P+ + LP +TLH L+ P W L SY A +A
Sbjct: 114 YGRDLRLVYAGRQLAPETALADLRLPPDSTLHLLSRLRSTPYPDAWQLASYIASTAAAAK 173
Query: 286 DHIGH 300
H
Sbjct: 174 SDPAH 178
>06_03_0032 -
15697530-15697669,15699215-15699437,15699823-15699929,
15700047-15700224,15700393-15700455,15700474-15700602,
15701211-15701430,15702162-15702262,15702954-15703062,
15705169-15705290,15705473-15705515,15705848-15705903,
15705983-15706089,15706167-15706342,15706507-15706618,
15706711-15706759,15707184-15707276,15707452-15707571,
15707686-15707787,15709442-15709540,15710103-15710237,
15710421-15710499,15710747-15710822,15710904-15710993,
15711139-15711217,15711304-15711338,15711457-15711531,
15712628-15713375
Length = 1221
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 176 PGCRGDQSGGRQHFVFIRCGARQ*HTLYDSIRRI*HSFCN 57
PG GDQ+ G +H ++ +YD + ++ H+FC+
Sbjct: 851 PGDEGDQNVGSKHGWQLKRLGYAGAAVYDRLEKVRHNFCS 890
>02_01_0775 + 5775949-5777385
Length = 478
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -1
Query: 230 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGA 114
GG +W Q RV G GC G + CGA
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGA 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,680,400
Number of Sequences: 37544
Number of extensions: 472515
Number of successful extensions: 1372
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -