Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30644
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   5e-18
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        29   3.3  
SB_37815| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_16900| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_14511| Best HMM Match : Keratin_B2 (HMM E-Value=2.2)                29   5.8  
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)                 28   7.7  

>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 46/73 (63%), Positives = 49/73 (67%)
 Frame = +2

Query: 269 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 448
           A R FQT+S  +D+DSAAKF                    FGSLIIGYARNPSLKQQLFS
Sbjct: 86  ASRGFQTSSAVQDVDSAAKFIGAGAATVGAAGSGAGIGTVFGSLIIGYARNPSLKQQLFS 145

Query: 449 YAILGFALSEAMG 487
           YAILGFALSEAMG
Sbjct: 146 YAILGFALSEAMG 158


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
 Frame = -2

Query: 460  QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 299
            QNG + E++L++  G + G  +       ++T    S T + H  CT  ++     + L 
Sbjct: 1728 QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 1787

Query: 298  DRCGLEGPHCRELCRTAGTIC 236
              C  +  +CR +C      C
Sbjct: 1788 INCPKKCKYCRPVCEDTSADC 1808


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
 Frame = -2

Query: 460 QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 299
           QNG + E++L++  G + G  +       ++T    S T + H  CT  ++     + L 
Sbjct: 52  QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 111

Query: 298 DRCGLEGPHCRELCRTAGTIC 236
             C  +  +CR +C      C
Sbjct: 112 INCPKKCKYCRPVCEDTSADC 132


>SB_37815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = +1

Query: 103 CYCRAPHLIKTKCC---LP--PD*SPLQPGLPSSATLH-WCDHLQQYPPIHRWYLLSY 258
           C    P L+ T CC   +P  P  S   PG+P  +  H WC  + + PP+  WY   Y
Sbjct: 47  CVVGKPPLV-TLCCRKAIPGNPVLSEAIPGVPVLSESHPWCPCVVRKPPLLYWYPYVY 103


>SB_16900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 273 TAESCVGQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGR 160
           T E C GQ +    GWV    + PV S  +  +W  G+
Sbjct: 71  TREWCEGQSLSGQLGWVPSSYIKPVNSLEK-HSWYHGQ 107


>SB_14511| Best HMM Match : Keratin_B2 (HMM E-Value=2.2)
          Length = 276

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
 Frame = +2

Query: 89  CRKVCVIVARRTL*K--QNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPTQ 262
           C++V     +R L    Q  +     R  S +C  +   T     SS  P  + + CP  
Sbjct: 204 CQRVLSSTCKRVLSSTCQRVLSSTCQRDLSSICQRVLSSTRQRVLSSMRPLVNSSSCPLV 263

Query: 263 LSAVRSFQTTS 295
            S+ R F   S
Sbjct: 264 NSSTRPFVNAS 274


>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
          Length = 718

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 131 KQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPTQLS 268
           ++  VC  TD+PC  + H ++ C   T   +T P    T C    S
Sbjct: 489 RRERVCSDTDKPCQGLDHEVRECQ-VTRPDTTTPTMPTTLCTIHYS 533


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,544,025
Number of Sequences: 59808
Number of extensions: 560597
Number of successful extensions: 1723
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1715
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)