Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30644
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    83   3e-16
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    83   3e-16
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    83   3e-16
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    29   5.1  
Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    28   6.8  
Z11126-4|CAA77472.2|  180|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 43/73 (58%), Positives = 46/73 (63%)
 Frame = +2

Query: 269 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 448
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 449 YAILGFALSEAMG 487
           YAILGFALSEAMG
Sbjct: 66  YAILGFALSEAMG 78


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 43/73 (58%), Positives = 46/73 (63%)
 Frame = +2

Query: 269 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 448
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 449 YAILGFALSEAMG 487
           YAILGFALSEAMG
Sbjct: 66  YAILGFALSEAMG 78


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 43/73 (58%), Positives = 46/73 (63%)
 Frame = +2

Query: 269 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 448
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 449 YAILGFALSEAMG 487
           YAILGFALSEAMG
Sbjct: 90  YAILGFALSEAMG 102


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 565 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 651
           P + VSVY I    PWN +F    ++V Q
Sbjct: 29  PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57


>Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical
           protein C08B6.6 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 690 PVDAHCRCNTHQSLHHYEGEV 628
           P+   CRCNT  +LH  EG V
Sbjct: 98  PIYVLCRCNTTNTLHRREGVV 118


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = +2

Query: 86   YCRKVCVIVARRTL*KQNAVCRQTDRPC----SQVCHLLQLCTGATTC 217
            Y RK C+  A+    +   +C+Q   P        C + + CTG  TC
Sbjct: 1409 YDRKRCICAAQHVAIR--GICKQKSAPAFAAPGDTCSMREKCTGGATC 1454


>Z11126-4|CAA77472.2|  180|Caenorhabditis elegans Hypothetical
           protein ZK643.6 protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 397 GAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRTAGTIC-VWV 227
           G ++C++ ++  SY+  RC S  E+ S ++ L   C      C  +C  A  +C +WV
Sbjct: 103 GTQECTDLANDCSYNQNRC-SVKEYSSLMHRL---CPKTCNAC-NICEDANKMCPIWV 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,479,266
Number of Sequences: 27780
Number of extensions: 403481
Number of successful extensions: 1320
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)