BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30644 (803 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 83 3e-16 D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 83 3e-16 AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 83 3e-16 Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 29 5.1 Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical pr... 28 6.8 U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 6.8 Z11126-4|CAA77472.2| 180|Caenorhabditis elegans Hypothetical pr... 28 9.0 >D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase subunit protein. Length = 92 Score = 82.6 bits (195), Expect = 3e-16 Identities = 43/73 (58%), Positives = 46/73 (63%) Frame = +2 Query: 269 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 448 A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65 Query: 449 YAILGFALSEAMG 487 YAILGFALSEAMG Sbjct: 66 YAILGFALSEAMG 78 >D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase subunit protein. Length = 92 Score = 82.6 bits (195), Expect = 3e-16 Identities = 43/73 (58%), Positives = 46/73 (63%) Frame = +2 Query: 269 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 448 A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65 Query: 449 YAILGFALSEAMG 487 YAILGFALSEAMG Sbjct: 66 YAILGFALSEAMG 78 >AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical protein Y82E9BR.3 protein. Length = 116 Score = 82.6 bits (195), Expect = 3e-16 Identities = 43/73 (58%), Positives = 46/73 (63%) Frame = +2 Query: 269 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 448 A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89 Query: 449 YAILGFALSEAMG 487 YAILGFALSEAMG Sbjct: 90 YAILGFALSEAMG 102 >Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical protein C54D10.6 protein. Length = 348 Score = 28.7 bits (61), Expect = 5.1 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +1 Query: 565 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 651 P + VSVY I PWN +F ++V Q Sbjct: 29 PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57 >Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical protein C08B6.6 protein. Length = 218 Score = 28.3 bits (60), Expect = 6.8 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -3 Query: 690 PVDAHCRCNTHQSLHHYEGEV 628 P+ CRCNT +LH EG V Sbjct: 98 PIYVLCRCNTTNTLHRREGVV 118 >U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1 x-hybridizingprotein 1, isoform a protein. Length = 1876 Score = 28.3 bits (60), Expect = 6.8 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Frame = +2 Query: 86 YCRKVCVIVARRTL*KQNAVCRQTDRPC----SQVCHLLQLCTGATTC 217 Y RK C+ A+ + +C+Q P C + + CTG TC Sbjct: 1409 YDRKRCICAAQHVAIR--GICKQKSAPAFAAPGDTCSMREKCTGGATC 1454 >Z11126-4|CAA77472.2| 180|Caenorhabditis elegans Hypothetical protein ZK643.6 protein. Length = 180 Score = 27.9 bits (59), Expect = 9.0 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -2 Query: 397 GAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRTAGTIC-VWV 227 G ++C++ ++ SY+ RC S E+ S ++ L C C +C A +C +WV Sbjct: 103 GTQECTDLANDCSYNQNRC-SVKEYSSLMHRL---CPKTCNAC-NICEDANKMCPIWV 155 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,479,266 Number of Sequences: 27780 Number of extensions: 403481 Number of successful extensions: 1320 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1222 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1317 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1966828226 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -