Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30644
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    46   4e-05
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th...    30   1.6  
At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ...    29   4.8  
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    28   6.3  
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   8.3  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +2

Query: 389 FGSLIIGYARNPSLKQQLFSYAILGFALSEAM 484
           F SLI   ARNPSL +Q F YAILGFAL+EA+
Sbjct: 39  FSSLIHSVARNPSLAKQSFGYAILGFALTEAI 70


>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
           threonine--tRNA ligase, putative similar to SP|O04630
           Threonyl-tRNA synthetase, mitochondrial precursor (EC
           6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
           thaliana}; contains Pfam profiles PF00587: tRNA
           synthetase class II core domain (G, H, P, S and T),
           PF03129: Anticodon binding domain, PF02824: TGS domain
          Length = 458

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/66 (24%), Positives = 34/66 (51%)
 Frame = +3

Query: 216 AAVPTHTQMVPAVLHSSLQCGPSRPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSA 395
           + +P   ++   +    L+   SRPH  ++ +TLLP+ +    R+WE    ++ ++ S  
Sbjct: 15  SVIPKRIRLFEEIQAEQLEQLQSRPHDPIK-ITLLPDGIEKEGRRWETSPMDIAVQISKG 73

Query: 396 PSSSAM 413
            + SA+
Sbjct: 74  LAKSAL 79


>At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing
           protein low similarity to cysteine-rich polycomb-like
           protein (cpp1) [Glycine max] GI:4218187; contains Pfam
           profile PF03638: Tesmin/TSO1-like CXC domain
          Length = 360

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 210 PLAAVPTHTQMVPAVLHSSLQCGPSRPHRSLR--TLTLLPN 326
           PL ++P ++  +   L S + C P  P+RSL   T TLLP+
Sbjct: 213 PLFSIPDNS--IQNALGSPMSCSPKLPYRSLMGYTSTLLPD 251


>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
            protein / CHD family protein similar to chromatin
            remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
            GI:6478518; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
            (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 540  VNSLESEEQQDAIIRQNRPIASDKAKPRMAYENN 439
            +N+L +EE++DAI R   P+  D   P+M   +N
Sbjct: 1896 LNTLRAEEKRDAIKRGKLPLFLDMPLPQMLDSSN 1929


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 124 LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 234
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,173,354
Number of Sequences: 28952
Number of extensions: 361043
Number of successful extensions: 946
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)