Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30643
         (489 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.0  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   6.0  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   7.9  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 242 DHDSSLHLHFLNDAGEDAATDRNVTSEGTLLVNVG 138
           D+D + H+  L+D   + AT+R     G L VN G
Sbjct: 275 DYDLTTHVMLLSDWMHEDATER---FPGRLAVNTG 306


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 242 DHDSSLHLHFLNDAGEDAATDRNVTSEGTLLVNVG 138
           D+D + H+  L+D   + AT+R     G L VN G
Sbjct: 275 DYDLTTHVMLLSDWMHEDATER---FPGRLAVNTG 306


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 286 ETAQEYVRAFVALLHGRGDW*YCNDRRMQTFVQN 387
           E   E+    +A +HG  +    N RR+ T  QN
Sbjct: 98  EAFNEFRTKILAQVHGTNNGTNKNMRRLSTTTQN 131


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 267 PNTIGSRNGTGICPCICRLASWTWRLVI 350
           PN I   NGTG+     RLA+    LV+
Sbjct: 161 PNNIILGNGTGVQLVPTRLANGDIALVL 188


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,747
Number of Sequences: 336
Number of extensions: 2166
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)