Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30643
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   102   3e-23
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   102   3e-23
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    34   0.010
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    25   4.6  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   4.6  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.1  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   6.1  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  102 bits (245), Expect = 3e-23
 Identities = 52/88 (59%), Positives = 60/88 (68%)
 Frame = +3

Query: 6   ETEKAFQKQATVFLNRKGGMKRKDMRHHKIVGLGFKTPRXAIDGTYIDKKCPFTGNVSIR 185
           ++E+AFQKQ  +F N K G  R   R +K VGLGFKTP  AI G Y+DKKCPF G VSIR
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 186 XRILTGVVQKMKMQRTIVIRRDYFTTYP 269
            RILTG V   KM RTI+IRR+Y    P
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIP 92



 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 35/53 (66%), Positives = 47/53 (88%)
 Frame = +2

Query: 254 LHYLPKYNRFEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRFNVLKV 412
           LH++PKYNR+EKRH+N++ H+SP F  +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 88  LHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  102 bits (245), Expect = 3e-23
 Identities = 52/88 (59%), Positives = 60/88 (68%)
 Frame = +3

Query: 6   ETEKAFQKQATVFLNRKGGMKRKDMRHHKIVGLGFKTPRXAIDGTYIDKKCPFTGNVSIR 185
           ++E+AFQKQ  +F N K G  R   R +K VGLGFKTP  AI G Y+DKKCPF G VSIR
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 186 XRILTGVVQKMKMQRTIVIRRDYFTTYP 269
            RILTG V   KM RTI+IRR+Y    P
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIP 92



 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 35/53 (66%), Positives = 47/53 (88%)
 Frame = +2

Query: 254 LHYLPKYNRFEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRFNVLKV 412
           LH++PKYNR+EKRH+N++ H+SP F  +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 88  LHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 34.3 bits (75), Expect = 0.010
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 329 MDVEIGDIVTIGECRPLSKTVRFNVLKV 412
           ++  +GD VTI  CRP S T RF ++K+
Sbjct: 47  LNCNVGDAVTIQPCRPRSATKRFEIIKI 74


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 239 HDSSLHLHFLNDAGEDAATDRNVTSEGTL 153
           HDS+LH +FLN   +D   +   T+E  L
Sbjct: 31  HDSALHSYFLNARVKDVILESLRTTEEKL 59


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 144 IDKKC-PFTGNVSIRXRILTGVVQKMKMQRTIVIRRDYFTTYPNTI 278
           I+ KC   +  +S+  + L G+++++++ RT++ + +   TY N I
Sbjct: 55  IESKCNELSSEISLLRKRL-GIIEEIEIPRTLIDQYECLVTYHNGI 99


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 242 DHDSSLHL--HFLNDAGEDAATDRNVTSEGTLLVNVGT 135
           +H   +H+  H L D  + +  DRN  +EGT   N  T
Sbjct: 128 NHKLEIHVYKHILPDLPQSSEVDRNSETEGTREENSNT 165


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 335 VEIGDIVTIGECRPLSKTVRFNVL 406
           V +GDIVTI  C  +    R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,241
Number of Sequences: 5004
Number of extensions: 37079
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)