Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30643
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 104 3e-23
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 104 3e-23
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 103 1e-22
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 102 1e-22
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 99 2e-21
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 89 2e-18
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 32 0.28
08_02_0383 - 16539472-16539633,16543044-16543205 31 0.66
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 30 0.87
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591 28 3.5
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352... 28 3.5
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 27 6.1
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 104 bits (250), Expect = 3e-23
Identities = 56/107 (52%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Frame = +3
Query: 6 ETEKAFQKQATVFLN-RKGGMKRKD----MRHHKIVGLGFKTPRXAIDGTYIDKKCPFTG 170
+TEKAF KQ VFL+ +K G +K R K +GLGFKTPR AI+GTYIDKKCPFTG
Sbjct: 4 QTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTG 63
Query: 171 NVSIRXRILTGVVQKMKMQRTIVIRRDYFTTYPNTIGSRNGTGICPC 311
VSIR RI+ G KM RTI++RR+Y R G + PC
Sbjct: 64 TVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY--QRQGANLPPC 108
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +2
Query: 278 RFEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRFNVLKV 412
R+EKRH N+ H+SPCF V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 109 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 104 bits (250), Expect = 3e-23
Identities = 56/107 (52%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Frame = +3
Query: 6 ETEKAFQKQATVFLN-RKGGMKRKD----MRHHKIVGLGFKTPRXAIDGTYIDKKCPFTG 170
+TEKAF KQ VFL+ +K G +K R K +GLGFKTPR AI+GTYIDKKCPFTG
Sbjct: 4 QTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTG 63
Query: 171 NVSIRXRILTGVVQKMKMQRTIVIRRDYFTTYPNTIGSRNGTGICPC 311
VSIR RI+ G KM RTI++RR+Y R G + PC
Sbjct: 64 TVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY--QRQGANLPPC 108
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +2
Query: 278 RFEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRFNVLKV 412
R+EKRH N+ H+SPCF V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 109 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 103 bits (246), Expect = 1e-22
Identities = 56/110 (50%), Positives = 67/110 (60%), Gaps = 5/110 (4%)
Frame = +3
Query: 6 ETEKAFQKQATVFLN-RKGGMKRKD----MRHHKIVGLGFKTPRXAIDGTYIDKKCPFTG 170
+TEKAF KQ VFL+ +K G +K R K +GLGFKTPR AI+GTYIDKKCPFTG
Sbjct: 4 QTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTG 63
Query: 171 NVSIRXRILTGVVQKMKMQRTIVIRRDYFTTYPNTIGSRNGTGICPCICR 320
VSIR RI+ G KM RTI++RR+Y N G C+ R
Sbjct: 64 TVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCMRR 113
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 102 bits (245), Expect = 1e-22
Identities = 52/88 (59%), Positives = 62/88 (70%), Gaps = 5/88 (5%)
Frame = +3
Query: 6 ETEKAFQKQATVFLN-RKGGMKRKD----MRHHKIVGLGFKTPRXAIDGTYIDKKCPFTG 170
+TEKAF KQ VFL+ +K G +K R K +GLGFKTPR AI+GTYIDKKCPFTG
Sbjct: 4 QTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTG 63
Query: 171 NVSIRXRILTGVVQKMKMQRTIVIRRDY 254
VSIR RI+ G KM RTI++RR+Y
Sbjct: 64 TVSIRGRIIAGTCHSAKMNRTIIVRRNY 91
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +2
Query: 278 RFEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRFNVLKV 412
R+EKRH N+ H+SPCF V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 124 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 167
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 98.7 bits (235), Expect = 2e-21
Identities = 51/88 (57%), Positives = 59/88 (67%), Gaps = 5/88 (5%)
Frame = +3
Query: 6 ETEKAFQKQATVFLNRKGGMKRKDM-----RHHKIVGLGFKTPRXAIDGTYIDKKCPFTG 170
+TE+AF KQ VFL K K K R K +GLGFKTPR AI+GTYIDKKCPFTG
Sbjct: 4 QTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTG 63
Query: 171 NVSIRXRILTGVVQKMKMQRTIVIRRDY 254
VSIR RI+ G KM RTI++RR+Y
Sbjct: 64 TVSIRGRIIAGTCHSAKMNRTIIVRRNY 91
Score = 71.3 bits (167), Expect = 4e-13
Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 7/60 (11%)
Frame = +2
Query: 254 LHYLPKYNR-------FEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRFNVLKV 412
LH++ KY R +EKRH N+ H+SPCF V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 92 LHFVKKYQRQVNLVAGYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 150
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 89.0 bits (211), Expect = 2e-18
Identities = 44/80 (55%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
Frame = +3
Query: 27 KQATVFLNRKGGMKRKD----MRHHKIVGLGFKTPRXAIDGTYIDKKCPFTGNVSIRXRI 194
+Q F +K G +K R K +GLGFKTPR AI+GTYIDKKCPFTG VSIR RI
Sbjct: 3 EQVLDFSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI 62
Query: 195 LTGVVQKMKMQRTIVIRRDY 254
+ G KM RTI++RR+Y
Sbjct: 63 IAGTCHSAKMNRTIIVRRNY 82
Score = 79.8 bits (188), Expect = 1e-15
Identities = 35/53 (66%), Positives = 43/53 (81%)
Frame = +2
Query: 254 LHYLPKYNRFEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRFNVLKV 412
LH++ KY R+EKRH N+ H+SPCF V+ GD V IG+CRPLSKTVRFNV+KV
Sbjct: 83 LHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVIKV 134
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 383 WTKVCIRRSLQYHQSPRP*SKATNARTYSCAVSRTY 276
W C RR Y +SP P + R+YS + SR+Y
Sbjct: 129 WKNRCYRRGRSYSRSPSPRRGRSRGRSYSRSRSRSY 164
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 30.7 bits (66), Expect = 0.66
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +2
Query: 248 RLLHYLPKYNRFEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRFNVLKV 412
RL H+ YNR+ KR H D IGD V + RPLSK + V ++
Sbjct: 23 RLFHH-KMYNRYVKRTSKFMAHDET--EDCNIGDRVKLDPSRPLSKRKHWVVAEI 74
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 30.3 bits (65), Expect = 0.87
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 266 PKYNRFEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRF 397
PKY R E+ + H P ++GD+V + RP+SKT F
Sbjct: 996 PKYKRRERIKKKYQAH-DPD-NQFKVGDVVELRRSRPISKTKHF 1037
>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
Length = 573
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 86 VTHVLPLHATFPVQENGGLFLKRFLCL 6
V H +P+H T+ ++ L+L R +CL
Sbjct: 293 VAHFIPVHTTYSGKKLAELYLARIMCL 319
>03_01_0458 -
3521938-3522024,3522133-3522213,3522673-3522806,
3523189-3523270,3523420-3523692,3523953-3524162,
3524252-3524337,3525197-3525289,3526003-3526227,
3526320-3526930,3529328-3529395,3529491-3529679,
3529773-3529901,3530013-3532484
Length = 1579
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -1
Query: 96 QSYGDACPSSSCHLSCSGKR 37
QS GD PSSSC S SG R
Sbjct: 279 QSPGDEAPSSSCQSSVSGHR 298
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 296 RNMSVHLSPCFMDVEIGDIVTIGECRPLSKTV 391
R S +LS FM + G + G C P+SKTV
Sbjct: 310 REKSSNLSNHFMHHQQGFMTNYGACSPVSKTV 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,419,741
Number of Sequences: 37544
Number of extensions: 243789
Number of successful extensions: 591
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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