Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30643
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             111   4e-25
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.055
SB_50252| Best HMM Match : SAM_1 (HMM E-Value=0.00064)                 29   1.6  
SB_797| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   3.6  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   6.3  
SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)                    27   8.3  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  111 bits (266), Expect = 4e-25
 Identities = 59/99 (59%), Positives = 72/99 (72%), Gaps = 16/99 (16%)
 Frame = +3

Query: 6   ETEKAFQKQATVFLNRKGGM----KRKDMRHHKIVGLGFKTP------------RXAIDG 137
           +TE+A+QKQA +F NRK  +    K+KD+R  + VGLGFKTP            R AI+G
Sbjct: 4   QTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEG 63

Query: 138 TYIDKKCPFTGNVSIRXRILTGVVQKMKMQRTIVIRRDY 254
           TYIDKKCPFTGNVSIR RILTG+ + MKM+RTI+IRRDY
Sbjct: 64  TYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDY 102



 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 38/53 (71%), Positives = 48/53 (90%)
 Frame = +2

Query: 254 LHYLPKYNRFEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRFNVLKV 412
           LHY+ KYNRFEKRH+N++ H SPCF D+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 103 LHYIKKYNRFEKRHKNLAAHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.055
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +2

Query: 344 GDIVTIGECRPLSKTVRFNVLKV 412
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_50252| Best HMM Match : SAM_1 (HMM E-Value=0.00064)
          Length = 285

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 260 SEVIAADHDSSLHLHFLNDAGEDAATDRNVTSEGTLLVNVGTVNR 126
           + V+  DH+ ++ + F+ D+G D  T R+   E   L  +GT  +
Sbjct: 182 ASVLPPDHNQTVQVKFMVDSGSDVTTLRHDVIERLGLPRIGTARQ 226


>SB_797| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 221 DAENYRDPPRLLHYLPKYNRFEKRHRNMSVHLSPCFMDVEI 343
           D + Y  PPRL+H+  + ++ ++       H+   F D E+
Sbjct: 54  DTDRYLPPPRLIHHAERGSKLQQDASQYQHHVKGNFSDDEL 94


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 337 HVHEARRQMHGHIPVPFLEP 278
           HV +A R  HG++P+P L P
Sbjct: 82  HVDQACRSFHGNLPLPVLAP 101


>SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +3

Query: 234 IVIRRDYFTTYPNTIGSRNGTGICPCICRLASWTWRLVIL*RSANADLCPKQLDSMF 404
           I+   DY        G  N      C CRL  W W +  L R+ N+D C  ++   F
Sbjct: 125 IICYNDYILERVGHRGLLNYLRNLDCNCRLTLWFW-IWRLQRARNSDSCQSEIGVNF 180


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = +3

Query: 12   EKAFQKQATVFLNRKGGMKRKDMRHHKIVGLGFKTPRXAIDGTYIDKKCPFTGNVSIRXR 191
            +KA Q   +   N K GM+    ++  ++  G +T + A+D   + K         ++  
Sbjct: 3708 DKALQLAGSFMFNEKTGMRPTVPKYLLLITDGDQTDKKALDYIDLSKSSEAVKENGVQVY 3767

Query: 192  ILTG---VVQKMKMQRTIVIRRDYFTTYP 269
             ++    V   M+  RTI  R DY   +P
Sbjct: 3768 AVSSRPEVDTNMQDLRTIASRDDYAHAWP 3796


>SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)
          Length = 1418

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 206 DAGEDAATDRNVTSEGTLLVNVGTVNRLSGSFEA*TNNL 90
           D G      +NV + G   V  GTV R S +FE    NL
Sbjct: 668 DVGSSEDLHQNVDAHGLSAVKTGTVKRQSRNFEEGKVNL 706


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,187,115
Number of Sequences: 59808
Number of extensions: 276705
Number of successful extensions: 661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)